Literature DB >> 11053736

Geostatistical analysis of the distribution of NH(4)(+) and NO(2)(-)-oxidizing bacteria and serotypes at the millimeter scale along a soil transect.

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Abstract

Soil is known to be heterogeneous for different activities at several spatial scales. Most studies have focused on macro- and meso-scales but micro-scales are rarely addressed. Hence, the spatial structure of NH(4)(+)- and NO(2)(-)-oxidizers and of various serotypes of the latter was studied along two transects of approximately 10 cm, with two micro-samples taken from each millimeter. The presence of NH(4)(+)- and NO(2)(-)-oxidizers in a micro-sample was detected using colorimetric tests for the presence or absence of NO(2)(-) in cultures of the micro-samples. Geostatistics was used to determine the range of spatial influence of the bacterial types. For both types, semi-variograms indicated a non-random spatial pattern. The spatial dependence ranged from 2 to 4 mm for NO(2)(-)- and NH(4)(+)-oxidizers respectively, and the two bacterial types were not independently spatially located. Among the six serotypes of NO(2)(-)-oxidizers, only one exhibited a spatial dependence. The existence of a spatial structure at the millimeter scale suggests that micro-scale sampling should be employed for soil studies. Therby, data on bacterial populations and activities can be referred to a spatial scale which is meaningful to these organisms.

Year:  2000        PMID: 11053736     DOI: 10.1111/j.1574-6941.2000.tb00754.x

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  27 in total

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Authors:  Adam C Martiny; Thomas M Jørgensen; Hans-Jørgen Albrechtsen; Erik Arvin; Søren Molin
Journal:  Appl Environ Microbiol       Date:  2003-11       Impact factor: 4.792

2.  Spatial analysis of archaeal community structure in grassland soil.

Authors:  Graeme W Nicol; L Anne Glover; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

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Authors:  M Claire Horner-Devine; Karen M Carney; Brendan J M Bohannan
Journal:  Proc Biol Sci       Date:  2004-01-22       Impact factor: 5.349

Review 4.  Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution.

Authors:  Alban Ramette; James M Tiedje
Journal:  Microb Ecol       Date:  2007-02       Impact factor: 4.552

5.  Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil.

Authors:  Joanna M Becker; Tim Parkin; Cindy H Nakatsu; Jayson D Wilbur; Allan Konopka
Journal:  Microb Ecol       Date:  2006-02-10       Impact factor: 4.552

6.  Spatial scale drives patterns in soil bacterial diversity.

Authors:  Sarah L O'Brien; Sean M Gibbons; Sarah M Owens; Jarrad Hampton-Marcell; Eric R Johnston; Julie D Jastrow; Jack A Gilbert; Folker Meyer; Dionysios A Antonopoulos
Journal:  Environ Microbiol       Date:  2016-03-21       Impact factor: 5.491

7.  Negative effects of sample pooling on PCR-based estimates of soil microbial richness and community structure.

Authors:  Daniel K Manter; Tiffany L Weir; Jorge M Vivanco
Journal:  Appl Environ Microbiol       Date:  2010-02-05       Impact factor: 4.792

8.  Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning.

Authors:  Ella Wessén; Mats Söderström; Maria Stenberg; David Bru; Maria Hellman; Allana Welsh; Frida Thomsen; Leif Klemedtson; Laurent Philippot; Sara Hallin
Journal:  ISME J       Date:  2011-01-13       Impact factor: 10.302

Review 9.  Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales.

Authors:  Regina L Wilpiszeski; Jayde A Aufrecht; Scott T Retterer; Matthew B Sullivan; David E Graham; Eric M Pierce; Olivier D Zablocki; Anthony V Palumbo; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

10.  Deterministic assembly processes govern bacterial community structure in the Fynbos, South Africa.

Authors:  I Moroenyane; S B M Chimphango; J Wang; H-K Kim; Jonathan Miles Adams
Journal:  Microb Ecol       Date:  2016-04-28       Impact factor: 4.552

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