Literature DB >> 11019122

Two state behavior in a solvable model of beta-hairpin folding.

C Guo1, H Levine, D A Kessler.   

Abstract

Understanding the mechanism of protein secondary structure formation is an essential part of the protein-folding puzzle. Here we describe a simple model for the formation of a beta hairpin, motivated by the fact that folding of a beta hairpin captures much of the basic physics of protein folding. The modeled hairpin is composed of two interacting Gaussian chains with one pairwise (two-body) and two many-body interactions. We show that these many-body interactions, arising from side chain packing effects, are responsible for producing an "all-or-none" folding transition. We also estimate the (single exponential) folding/unfolding rate via calculating the thermodynamic weight of the "critical" droplet/bubble.

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Year:  2000        PMID: 11019122     DOI: 10.1103/PhysRevLett.84.3490

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  3 in total

1.  RNA hairpin-folding kinetics.

Authors:  Wenbing Zhang; Shi-Jie Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

2.  How does a beta -hairpin fold/unfold? competition between topology and heterogeneity in a solvable model.

Authors:  C Guo; H Levine; D A Kessler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

3.  Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins.

Authors:  Mingchen Chen; Xingcheng Lin; Wei Lu; José N Onuchic; Peter G Wolynes
Journal:  J Phys Chem B       Date:  2016-11-11       Impact factor: 2.991

  3 in total

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