Literature DB >> 10995462

How does a beta -hairpin fold/unfold? competition between topology and heterogeneity in a solvable model.

C Guo1, H Levine, D A Kessler.   

Abstract

We study the competition between topological effects and sequence inhomogeneities in determining the thermodynamics and the un/folding kinetics of a beta-hairpin. Our work utilizes a new exactly solvable model that allows for arbitrary configurations of native contacts. In general, the competition between heterogeneity and topology results in a crossover of the dominant transition state. Interestingly, near this crossover, the single reaction coordinate picture can be seriously misleading. Our results also suggest that inferring the folding pathway from unfolding simulations is not always justified.

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Year:  2000        PMID: 10995462      PMCID: PMC27099          DOI: 10.1073/pnas.190103297

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniques.

Authors:  A Kolinski; B Ilkowski; J Skolnick
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking.

Authors:  L B Moran; J P Schneider; A Kentsis; G A Reddy; T R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

3.  Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G.

Authors:  V S Pande; D S Rokhsar
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

4.  A simple model for calculating the kinetics of protein folding from three-dimensional structures.

Authors:  V Muñoz; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

5.  Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.

Authors:  E Alm; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

6.  Experiment and theory highlight role of native state topology in SH3 folding.

Authors:  D S Riddle; V P Grantcharova; J V Santiago; E Alm; I Ruczinski; D Baker
Journal:  Nat Struct Biol       Date:  1999-11

7.  Two state behavior in a solvable model of beta-hairpin folding.

Authors:  C Guo; H Levine; D A Kessler
Journal:  Phys Rev Lett       Date:  2000-04-10       Impact factor: 9.161

8.  A statistical mechanical model for beta-hairpin kinetics.

Authors:  V Muñoz; E R Henry; J Hofrichter; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

9.  Protein folding kinetics: timescales, pathways and energy landscapes in terms of sequence-dependent properties.

Authors:  T Veitshans; D Klimov; D Thirumalai
Journal:  Fold Des       Date:  1997

10.  Folding dynamics and mechanism of beta-hairpin formation.

Authors:  V Muñoz; P A Thompson; J Hofrichter; W A Eaton
Journal:  Nature       Date:  1997-11-13       Impact factor: 49.962

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  3 in total

1.  Energy landscape and dynamics of the beta-hairpin G peptide and its isomers: Topology and sequences.

Authors:  Buyong Ma; Ruth Nussinov
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

2.  Master equation approach to finding the rate-limiting steps in biopolymer folding.

Authors:  Wenbing Zhang; Shi-Jie Chen
Journal:  J Chem Phys       Date:  2003-02-15       Impact factor: 3.488

3.  Local vs global motions in protein folding.

Authors:  Gia G Maisuradze; Adam Liwo; Patrick Senet; Harold A Scheraga
Journal:  J Chem Theory Comput       Date:  2013-07-09       Impact factor: 6.006

  3 in total

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