Literature DB >> 11017186

RNA: versatility in form and function.

M G Caprara1, T W Nilsen.   

Abstract

RNA performs a remarkable range of functions in all cells. In addition to its central role in information transfer from DNA to protein, it is essential for functions as diverse as RNA processing, chromosome end-maintenance and dosage compensation. The versatility of RNA derives from its unique ability to use direct readout via base-pairing for sequence specific targeting (or templating) in combination with its capacity to form elaborate three dimensional structures. Such structures can perform catalysis or serve as protein recognition surfaces. In this short review, we attempt to give a flavor for the diversity of functional RNAs in the cell and highlight, using selected examples, two quite distinct activities, catalysis and sequence specific targeting. Within each section, we discuss how the lessons we have learned from these systems may apply to other, less well understood, RNAs.

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Year:  2000        PMID: 11017186     DOI: 10.1038/82816

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  13 in total

1.  Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs.

Authors:  G C MacIntosh; C Wilkerson; P J Green
Journal:  Plant Physiol       Date:  2001-11       Impact factor: 8.340

2.  Uncovering the role of genomic "dark matter" in human disease.

Authors:  Lance Martin; Howard Y Chang
Journal:  J Clin Invest       Date:  2012-05-01       Impact factor: 14.808

Review 3.  The expanding transcriptome: the genome as the 'Book of Sand'.

Authors:  Luis M Mendes Soares; Juan Valcárcel
Journal:  EMBO J       Date:  2006-03-02       Impact factor: 11.598

4.  Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity.

Authors:  Zhe Zhang; Peng Xiong; Tongchuan Zhang; Junfeng Wang; Jian Zhan; Yaoqi Zhou
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

5.  Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity.

Authors:  Coralie Halls; Sabine Mohr; Mark Del Campo; Quansheng Yang; Eckhard Jankowsky; Alan M Lambowitz
Journal:  J Mol Biol       Date:  2006-10-03       Impact factor: 5.469

Review 6.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

7.  A DExH/D-box protein coordinates the two steps of splicing in a group I intron.

Authors:  Abby L Bifano; Mark G Caprara
Journal:  J Mol Biol       Date:  2008-09-04       Impact factor: 5.469

8.  RDMAS: a web server for RNA deleterious mutation analysis.

Authors:  Wenjie Shu; Xiaochen Bo; Rujia Liu; Dongsheng Zhao; Zhiqiang Zheng; Shengqi Wang
Journal:  BMC Bioinformatics       Date:  2006-09-06       Impact factor: 3.169

Review 9.  Beyond the proteome: non-coding regulatory RNAs.

Authors:  Maciej Szymański; Jan Barciszewski
Journal:  Genome Biol       Date:  2002-04-15       Impact factor: 13.583

10.  Accurate Measurement of Residual Dipolar Couplings in Large RNAs by Variable Flip Angle NMR.

Authors:  Jan Marchant; Ad Bax; Michael F Summers
Journal:  J Am Chem Soc       Date:  2018-05-25       Impact factor: 15.419

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