Literature DB >> 11016972

The case of medium-dependent dual mechanisms for photoisomerization: one-bond-flip and hula-twist.

R S Liu1, G S Hammond.   

Abstract

This paper critically reviews examples in the literature of photochemical cis-trans isomerization paying particular attention to the medium effect and accompanied conformational changes. A case is made that the Hula-Twist mechanism, postulated in 1985 as a photochemical reaction pathway for a polyene chromophore imbedded in a protein binding cavity such as those of rhodopsin and bacteriorhodopsin, is also a dominant reaction pathway for a diene, or a longer polyene confined in a rigid (relative to isomerization rate) medium. The conventional one-bond-flip process is the preferred reaction pathway in a fluid medium. While defining experiments are proposed, this dual mechanistic approach successfully accounts for all examples in the literature on photoisomerization reactions whether involving conformational changes or not.

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Year:  2000        PMID: 11016972      PMCID: PMC17169          DOI: 10.1073/pnas.210323197

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  6 in total

1.  Enantioselective binding of an 11-cis-locked cyclopropyl retinal. The conformation of retinal in bovine rhodopsin.

Authors:  J Lou; M Hashimoto; N Berova; K Nakanishi
Journal:  Org Lett       Date:  1999-07-15       Impact factor: 6.005

2.  Key issues in the photochemistry and signalling-state formation of photosensor proteins.

Authors:  K J Hellingwerf
Journal:  J Photochem Photobiol B       Date:  2000-02       Impact factor: 6.252

Review 3.  From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump.

Authors:  R A Mathies; S W Lin; J B Ames; W T Pollard
Journal:  Annu Rev Biophys Biophys Chem       Date:  1991

4.  Structure at 0.85 A resolution of an early protein photocycle intermediate.

Authors:  U K Genick; S M Soltis; P Kuhn; I L Canestrelli; E D Getzoff
Journal:  Nature       Date:  1998-03-12       Impact factor: 49.962

5.  The primary process of vision and the structure of bathorhodopsin: a mechanism for photoisomerization of polyenes.

Authors:  R S Liu; A E Asato
Journal:  Proc Natl Acad Sci U S A       Date:  1985-01       Impact factor: 11.205

6.  The photosensitivities of visual pigments in the presence of hydroxylamine.

Authors:  H J Dartnall
Journal:  Vision Res       Date:  1968-04       Impact factor: 1.886

  6 in total
  12 in total

1.  The molecular basis for the high photosensitivity of rhodopsin.

Authors:  Robert S H Liu; Leticia U Colmenares
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

2.  Light activation of the isomerization and deprotonation of the protonated Schiff base retinal.

Authors:  Carlos Kubli-Garfias; Karim Salazar-Salinas; Emily C Perez-Angel; Jorge M Seminario
Journal:  J Mol Model       Date:  2011-01-05       Impact factor: 1.810

3.  The photophysics of green fluorescent protein: influence of the key amino acids at positions 65, 203, and 222.

Authors:  Gregor Jung; Jens Wiehler; Andreas Zumbusch
Journal:  Biophys J       Date:  2004-12-21       Impact factor: 4.033

4.  Donor-Acceptor Conjugated Linear Polyenes: A Study of Excited State Intramolecular Charge Transfer, Photoisomerization and Fluorescence Probe Properties.

Authors:  Prasanta Kumar Hota; Anil Kumar Singh
Journal:  J Fluoresc       Date:  2014-07-27       Impact factor: 2.217

5.  On the Configurational and Conformational Changes in Photoactive Yellow Protein that Leads to Signal Generation in Ectothiorhodospira halophila.

Authors:  K J Hellingwerf; J Hendriks; Th Gensch
Journal:  J Biol Phys       Date:  2002-09       Impact factor: 1.365

6.  Light-Activated Reversible Imine Isomerization: Towards a Photochromic Protein Switch.

Authors:  Tetyana Berbasova; Elizabeth M Santos; Meisam Nosrati; Chrysoula Vasileiou; James H Geiger; Babak Borhan
Journal:  Chembiochem       Date:  2016-02-10       Impact factor: 3.164

Review 7.  The structure of phytochrome: a picture is worth a thousand spectra.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  Plant Cell       Date:  2006-01       Impact factor: 11.277

8.  Cycloheximide congeners produced by Streptomyces sp. SC0581 and photoinduced interconversion between (E)- and (Z)-2,3-dehydroanhydrocycloheximides.

Authors:  Li Yang; Ping Wu; Jinghua Xue; Huitong Tan; Zheng Zhang; Xiaoyi Wei
Journal:  Beilstein J Org Chem       Date:  2017-05-30       Impact factor: 2.883

9.  Direct evidence for hula twist and single-bond rotation photoproducts.

Authors:  Aaron Gerwien; Monika Schildhauer; Stefan Thumser; Peter Mayer; Henry Dube
Journal:  Nat Commun       Date:  2018-06-28       Impact factor: 14.919

10.  Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography.

Authors:  Yang Ouk Jung; Jae Hyuk Lee; Joonghan Kim; Marius Schmidt; Keith Moffat; Vukica Srajer; Hyotcherl Ihee
Journal:  Nat Chem       Date:  2013-02-03       Impact factor: 24.427

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