Literature DB >> 11010911

Pacific Northwest marine sediments contain ammonia-oxidizing bacteria in the beta subdivision of the Proteobacteria.

S C Nold1, J Zhou, A H Devol, J M Tiedje.   

Abstract

The diversity of ammonia-oxidizing bacteria in aquatic sediments was studied by retrieving ammonia monooxygenase and methane monooxygenase gene sequences. Methanotrophs dominated freshwater sediments, while beta-proteobacterial ammonia oxidizers dominated marine sediments. These results suggest that gamma-proteobacteria such as Nitrosococcus oceani are minor members of marine sediment ammonia-oxidizing communities.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 11010911      PMCID: PMC92337          DOI: 10.1128/AEM.66.10.4532-4535.2000

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  13 in total

1.  Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

Authors:  F O Glöckner; B M Fuchs; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

2.  Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments.

Authors:  A M Costello; M E Lidstrom
Journal:  Appl Environ Microbiol       Date:  1999-11       Impact factor: 4.792

3.  Molecular analyses of the methane-oxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase

Authors: 
Journal:  Appl Environ Microbiol       Date:  1999-05       Impact factor: 4.792

4.  Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related.

Authors:  A J Holmes; A Costello; M E Lidstrom; J C Murrell
Journal:  FEMS Microbiol Lett       Date:  1995-10-15       Impact factor: 2.742

5.  The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations.

Authors:  J H Rotthauwe; K P Witzel; W Liesack
Journal:  Appl Environ Microbiol       Date:  1997-12       Impact factor: 4.792

6.  Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA.

Authors:  Jizhong Zhou; Mary Ellen Davey; Jordi B Figueras; Elizaveta Rivkina; David Gilichinsky; James M Tiedje
Journal:  Microbiology (Reading)       Date:  1997-12       Impact factor: 2.777

7.  Phylogenetic analysis of the bacterial communities in marine sediments.

Authors:  J P Gray; R P Herwig
Journal:  Appl Environ Microbiol       Date:  1996-11       Impact factor: 4.792

8.  Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake.

Authors:  A J Holmes; P Roslev; I R McDonald; N Iversen; K Henriksen; J C Murrell
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

9.  The phylogeny of marine and freshwater caulobacters reflects their habitat.

Authors:  D A Stahl; R Key; B Flesher; J Smit
Journal:  J Bacteriol       Date:  1992-04       Impact factor: 3.490

10.  A qualitative evaluation of the published oligonucleotides specific for the 16S rRNA gene sequences of the ammonia-oxidizing bacteria.

Authors:  J B Utåker; I F Nes
Journal:  Syst Appl Microbiol       Date:  1998-03       Impact factor: 4.022

View more
  27 in total

1.  Development and evaluation of functional gene arrays for detection of selected genes in the environment.

Authors:  L Wu; D K Thompson; G Li; R A Hurt; J M Tiedje; J Zhou
Journal:  Appl Environ Microbiol       Date:  2001-12       Impact factor: 4.792

2.  Widespread distribution in polar oceans of a 16S rRNA gene sequence with affinity to Nitrosospira-like ammonia-oxidizing bacteria.

Authors:  James T Hollibaugh; Nasreen Bano; Hugh W Ducklow
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

Review 3.  Nitrogen cycling in the ocean: new perspectives on processes and paradigms.

Authors:  Jonathan P Zehr; Bess B Ward
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

4.  Community structure of ammonia-oxidizing bacteria within anoxic marine sediments.

Authors:  Thomas E Freitag; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2003-03       Impact factor: 4.792

5.  Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water.

Authors:  Thomas E Freitag; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

6.  pmoA-based analysis of methanotrophs in a littoral lake sediment reveals a diverse and stable community in a dynamic environment.

Authors:  Michael Pester; Michael W Friedrich; Bernhard Schink; Andreas Brune
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

7.  Flow sorting of marine bacterioplankton after fluorescence in situ hybridization.

Authors:  Raju Sekar; Bernhard M Fuchs; Rudolf Amann; Jakob Pernthaler
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

8.  Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria.

Authors:  Byoung-Joon Park; Soo-Je Park; Dae-No Yoon; Stefan Schouten; Jaap S Sinninghe Damsté; Sung-Keun Rhee
Journal:  Appl Environ Microbiol       Date:  2010-09-24       Impact factor: 4.792

9.  Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil.

Authors:  Man-Young Jung; Soo-Je Park; Deullae Min; Jin-Seog Kim; W Irene C Rijpstra; Jaap S Sinninghe Damsté; Geun-Joong Kim; Eugene L Madsen; Sung-Keun Rhee
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

10.  Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California.

Authors:  G D O'Mullan; B B Ward
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.