Literature DB >> 11010909

Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups.

H J Harmsen1, A C Wildeboer-Veloo, J Grijpstra, J Knol, J E Degener, G W Welling.   

Abstract

Two 16S rRNA-targeted probes were developed: one for the Coriobacterium group and the other for the Atopobium cluster (which comprises most of the Coriobacteriaceae species, including the Coriobacterium group). The new probes were based on sequences of three new Coriobacteriaceae strains isolated from human feces and clinical material and sequences from databases. Application of the probes to fecal samples showed that formula-fed infants had higher numbers of Coriobacterium group cells in their feces than breast-fed infants. In addition, based on the presented results, it is hypothesized that with the increasing age of a person, the diversity of Atopobium cluster species present in the feces increases.

Entities:  

Mesh：

Substances：

Year:  2000        PMID： 11010909      PMCID： PMC92335          DOI： 10.1128/AEM.66.10.4523-4527.2000

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  21 in total

1.  Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods.

Authors:  H J Harmsen; A C Wildeboer-Veloo; G C Raangs; A A Wagendorp; N Klijn; J G Bindels; G W Welling
Journal:  J Pediatr Gastroenterol Nutr       Date:  2000-01       Impact factor: 2.839

2.  Rapid and simple method for purification of nucleic acids.

Authors:  R Boom; C J Sol; M M Salimans; C L Jansen; P M Wertheim-van Dillen; J van der Noordaa
Journal:  J Clin Microbiol       Date:  1990-03       Impact factor: 5.948

Review 3.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

Authors:  R I Amann; W Ludwig; K H Schleifer
Journal:  Microbiol Rev       Date:  1995-03

4.  The oligonucleotide probe database.

Authors:  E W Alm; D B Oerther; N Larsen; D A Stahl; L Raskin
Journal:  Appl Environ Microbiol       Date:  1996-10       Impact factor: 4.792

5.  Human fecal flora: variation in bacterial composition within individuals and a possible effect of emotional stress.

Authors:  L V Holdeman; I J Good; W E Moore
Journal:  Appl Environ Microbiol       Date:  1976-03       Impact factor: 4.792

6.  Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut.

Authors:  A Suau; R Bonnet; M Sutren; J J Godon; G R Gibson; M D Collins; J Doré
Journal:  Appl Environ Microbiol       Date:  1999-11       Impact factor: 4.792

7.  Human colonic biota studied by ribosomal DNA sequence analysis.

Authors:  K H Wilson; R B Blitchington
Journal:  Appl Environ Microbiol       Date:  1996-07       Impact factor: 4.792

8.  Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples.

Authors:  P S Langendijk; F Schut; G J Jansen; G C Raangs; G R Kamphuis; M H Wilkinson; G W Welling
Journal:  Appl Environ Microbiol       Date:  1995-08       Impact factor: 4.792

9.  Development and validation of an automated, microscopy-based method for enumeration of groups of intestinal bacteria.

Authors:  G J Jansen; A C Wildeboer-Veloo; R H Tonk; A H Franks; G W Welling
Journal:  J Microbiol Methods       Date:  1999-09       Impact factor: 2.363

10.  Molecular analysis of the composition of the bifidobacterial and lactobacillus microflora of humans.

Authors:  A L McCartney; W Wenzhi; G W Tannock
Journal:  Appl Environ Microbiol       Date:  1996-12       Impact factor: 4.792
View more
  71 in total

1.  Extensive set of 16S rRNA-based probes for detection of bacteria in human feces.

Authors:  Hermie J M Harmsen; Gerwin C Raangs; Tao He; John E Degener; Gjalt W Welling
Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

2.  The role of colonic microbiota in lactose intolerance.

Authors:  Yan Zhong; Marion G Priebe; Roel J Vonk; Cheng-Yu Huang; Jean-Michel Antoine; Tao He; Hermie J M Harmsen; Gjalt W Welling
Journal:  Dig Dis Sci       Date:  2004-01       Impact factor: 3.199

3.  High-level dietary fibre up-regulates colonic fermentation and relative abundance of saccharolytic bacteria within the human faecal microbiota in vitro.

Authors:  Qing Shen; Lu Zhao; Kieran M Tuohy
Journal:  Eur J Nutr       Date:  2011-09-28       Impact factor: 5.614

4.  Fecal microbiota composition and frailty.

Authors:  Sandra P van Tongeren; Joris P J Slaets; H J M Harmsen; Gjalt W Welling
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

5.  In vitro fermentation of copra meal hydrolysate by human fecal microbiota.

Authors:  Phatcharin Prayoonthien; Robert A Rastall; Sofia Kolida; Sunee Nitisinprasert; Suttipun Keawsompong
Journal:  3 Biotech       Date:  2019-02-19       Impact factor: 2.406

6.  Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study.

Authors:  Susanne Mueller; Katiana Saunier; Christiana Hanisch; Elisabeth Norin; Livia Alm; Tore Midtvedt; Alberto Cresci; Stefania Silvi; Carla Orpianesi; Maria Cristina Verdenelli; Thomas Clavel; Corinna Koebnick; Hans-Joachim Franz Zunft; Joël Doré; Michael Blaut
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

7.  Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces.

Authors:  Takahiro Matsuki; Koichi Watanabe; Junji Fujimoto; Toshihiko Takada; Ryuichiro Tanaka
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

8.  Spatial organization of bacterial flora in normal and inflamed intestine: a fluorescence in situ hybridization study in mice.

Authors:  Alexander Swidsinski; Vera Loening-Baucke; Herbert Lochs; Laura-P Hale
Journal:  World J Gastroenterol       Date:  2005-02-28       Impact factor: 5.742

9.  Detection of Atopobium vaginae in postmenopausal women by cultivation-independent methods warrants further investigation.

Authors:  Jeremy P Burton; Estelle Devillard; Peter A Cadieux; Jo-Anne Hammond; Gregor Reid
Journal:  J Clin Microbiol       Date:  2004-04       Impact factor: 5.948

10.  Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes.

Authors:  Erwin G Zoetendal; Kaouther Ben-Amor; Hermie J M Harmsen; Frits Schut; Antoon D L Akkermans; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.