Literature DB >> 10999416

Use of matrix attachment regions (MARs) to minimize transgene silencing.

G C Allen1, S Spiker, W F Thompson.   

Abstract

Matrix attachment regions (MARs) are operationally defined as DNA elements that bind specifically to the nuclear matrix in vitro. It is possible, although unproven, that they also mediate binding of chromatin to the nuclear matrix in vivo and alter the topology of the genome in interphase nuclei. When MARs are positioned on either side of a transgene their presence usually results in higher and more stable expression in transgenic plants or cell lines, most likely by minimizing gene silencing. Our review explores current data and presents several plausible models to explain MAR effects on transgene expression.

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Year:  2000        PMID: 10999416     DOI: 10.1023/a:1006424621037

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  114 in total

1.  Generation of enhancer trap lines in Arabidopsis and characterization of expression patterns in the inflorescence.

Authors:  L Campisi; Y Yang; Y Yi; E Heilig; B Herman; A J Cassista; D W Allen; H Xiang; T Jack
Journal:  Plant J       Date:  1999-03       Impact factor: 6.417

2.  The Frequency and Degree of Cosuppression by Sense Chalcone Synthase Transgenes Are Dependent on Transgene Promoter Strength and Are Reduced by Premature Nonsense Codons in the Transgene Coding Sequence.

Authors:  Q. Que; H. Y. Wang; J. J. English; R. A. Jorgensen
Journal:  Plant Cell       Date:  1997-08       Impact factor: 11.277

3.  Approaching the Lower Limits of Transgene Variability.

Authors:  L. Mlynarova; LCP. Keizer; W. J. Stiekema; J. P. Nap
Journal:  Plant Cell       Date:  1996-09       Impact factor: 11.277

Review 4.  Dynamic chromatin: the regulatory domain organization of eukaryotic gene loci.

Authors:  C Bonifer; A Hecht; H Saueressig; D M Winter; A E Sippel
Journal:  J Cell Biochem       Date:  1991-10       Impact factor: 4.429

5.  Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions.

Authors:  C Benham; T Kohwi-Shigematsu; J Bode
Journal:  J Mol Biol       Date:  1997-11-28       Impact factor: 5.469

6.  Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.

Authors:  P N Cockerill; W T Garrard
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

7.  Dissection of the locus control function located on the chicken lysozyme gene domain in transgenic mice.

Authors:  C Bonifer; N Yannoutsos; G Krüger; F Grosveld; A E Sippel
Journal:  Nucleic Acids Res       Date:  1994-10-11       Impact factor: 16.971

8.  Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I.

Authors:  J Stalder; A Larsen; J D Engel; M Dolan; M Groudine; H Weintraub
Journal:  Cell       Date:  1980-06       Impact factor: 41.582

9.  Torsional stress stabilizes extended base unpairing in suppressor sites flanking immunoglobulin heavy chain enhancer.

Authors:  T Kohwi-Shigematsu; Y Kohwi
Journal:  Biochemistry       Date:  1990-10-16       Impact factor: 3.162

10.  Replication and transcription sites are colocalized in human cells.

Authors:  A B Hassan; R J Errington; N S White; D A Jackson; P R Cook
Journal:  J Cell Sci       Date:  1994-02       Impact factor: 5.285

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  55 in total

Review 1.  Transgene silencing in monocots.

Authors:  L M Iyer; S P Kumpatla; M B Chandrasekharan; T C Hall
Journal:  Plant Mol Biol       Date:  2000-06       Impact factor: 4.076

2.  Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts.

Authors:  Andrei Petrov; Iryna Pirozhkova; Gilles Carnac; Dalila Laoudj; Marc Lipinski; Yegor S Vassetzky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

3.  E. coli chromosomal DNA in a transgene locus created by microprojectile bombardment in tobacco.

Authors:  Bekir Ulker; Arthur K Weissinger; Steven Spiker
Journal:  Transgenic Res       Date:  2002-06       Impact factor: 2.788

4.  Elevation of transgene expression level by flanking matrix attachment regions (MAR) is promoter dependent: a study of the interactions of six promoters with the RB7 3' MAR.

Authors:  S Luke Mankin; George C Allen; Thomas Phelan; Steven Spiker; William F Thompson
Journal:  Transgenic Res       Date:  2003-02       Impact factor: 2.788

5.  A self-excising Cre recombinase allows efficient recombination of multiple ectopic heterospecific lox sites in transgenic tobacco.

Authors:  Ludmila Mlynárová; Jan-Peter Nap
Journal:  Transgenic Res       Date:  2003-02       Impact factor: 2.788

6.  Analysis of trans-silencing interactions using transcriptional silencers of varying strength and targets with and without flanking nuclear matrix attachment regions.

Authors:  Robert Ascenzi; Bekir Ulker; Joselyn J Todd; Dolores A Sowinski; Carolyn R Schimeneck; George C Allen; Arthur K Weissinger; William F Thompson
Journal:  Transgenic Res       Date:  2003-06       Impact factor: 2.788

7.  Complete sequence analysis of transgene loci from plants transformed via microprojectile bombardment.

Authors:  I Makarevitch; S K Svitashev; D A Somers
Journal:  Plant Mol Biol       Date:  2003-05       Impact factor: 4.076

8.  The presence of a chromatin boundary appears to shield a transgene in tobacco from RNA silencing.

Authors:  Ludmila Mlynárová; Andrea Hricová; Annelies Loonen; Jan-Peter Nap
Journal:  Plant Cell       Date:  2003-09       Impact factor: 11.277

9.  Heritable transgene expression pattern imposed onto maize ubiquitin promoter by maize adh-1 matrix attachment regions: tissue and developmental specificity in maize transgenic plants.

Authors:  François Torney; Anne Partier; Véronique Says-Lesage; Isabelle Nadaud; Pierre Barret; Michel Beckert
Journal:  Plant Cell Rep       Date:  2004-05-04       Impact factor: 4.570

10.  Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression.

Authors:  Stephen Rudd; Matthias Frisch; Korbinian Grote; Blake C Meyers; Klaus Mayer; Thomas Werner
Journal:  Plant Physiol       Date:  2004-06       Impact factor: 8.340

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