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Literature DB >> 10973473

A genomewide survey of basic helix-loop-helix factors in Drosophila.

Abstract

The basic helix-loop-helix (bHLH) transcription factors play important roles in the specification of tissue type during the development of animals. We have used the information contained in the recently published genomic sequence of Drosophila melanogaster to identify 12 additional bHLH proteins. By sequence analysis we have assigned these proteins to families defined by Atonal, Hairy-Enhancer of Split, Hand, p48, Mesp, MYC/USF, and the bHLH-Per, Arnt, Sim (PAS) domain. In addition, one single protein represents a unique family of bHLH proteins. mRNA in situ analysis demonstrates that the genes encoding these proteins are expressed in several tissue types but are particularly concentrated in the developing nervous system and mesoderm.

Entities: Gene Species

Mesh：

Year: 2000 PMID： 10973473 PMCID： PMC27042 DOI： 10.1073/pnas.170301897

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

48 in total

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3. amos, a proneural gene for Drosophila olfactory sense organs that is regulated by lozenge.

Authors: S E Goulding; P zur Lage; A P Jarman
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4. cato encodes a basic helix-loop-helix transcription factor implicated in the correct differentiation of Drosophila sense organs.

Authors: S E Goulding; N M White; A P Jarman
Journal: Dev Biol Date: 2000-05-01 Impact factor: 3.582

5. Positional dependence, cliques, and predictive motifs in the bHLH protein domain.

Authors: W R Atchley; W Terhalle; A Dress
Journal: J Mol Evol Date: 1999-05 Impact factor: 2.395

6. Comparative genomics of the eukaryotes.

Authors: G M Rubin; M D Yandell; J R Wortman; G L Gabor Miklos; C R Nelson; I K Hariharan; M E Fortini; P W Li; R Apweiler; W Fleischmann; J M Cherry; S Henikoff; M P Skupski; S Misra; M Ashburner; E Birney; M S Boguski; T Brody; P Brokstein; S E Celniker; S A Chervitz; D Coates; A Cravchik; A Gabrielian; R F Galle; W M Gelbart; R A George; L S Goldstein; F Gong; P Guan; N L Harris; B A Hay; R A Hoskins; J Li; Z Li; R O Hynes; S J Jones; P M Kuehl; B Lemaitre; J T Littleton; D K Morrison; C Mungall; P H O'Farrell; O K Pickeral; C Shue; L B Vosshall; J Zhang; Q Zhao; X H Zheng; S Lewis
Journal: Science Date: 2000-03-24 Impact factor: 47.728

7. Identification of a novel family of oligodendrocyte lineage-specific basic helix-loop-helix transcription factors.

Authors: Q Zhou; S Wang; D J Anderson
Journal: Neuron Date: 2000-02 Impact factor: 17.173

8. Sonic hedgehog--regulated oligodendrocyte lineage genes encoding bHLH proteins in the mammalian central nervous system.

Authors: Q R Lu; D Yuk; J A Alberta; Z Zhu; I Pawlitzky; J Chan; A P McMahon; C D Stiles; D H Rowitch
Journal: Neuron Date: 2000-02 Impact factor: 17.173

9. Discrimination between related DNA sites by a single amino acid residue of Myc-related basic-helix-loop-helix proteins.

Authors: C V Dang; C Dolde; M L Gillison; G J Kato
Journal: Proc Natl Acad Sci U S A Date: 1992-01-15 Impact factor: 11.205

10. The genome sequence of Drosophila melanogaster.

Authors: M D Adams; S E Celniker; R A Holt; C A Evans; J D Gocayne; P G Amanatides; S E Scherer; P W Li; R A Hoskins; R F Galle; R A George; S E Lewis; S Richards; M Ashburner; S N Henderson; G G Sutton; J R Wortman; M D Yandell; Q Zhang; L X Chen; R C Brandon; Y H Rogers; R G Blazej; M Champe; B D Pfeiffer; K H Wan; C Doyle; E G Baxter; G Helt; C R Nelson; G L Gabor; J F Abril; A Agbayani; H J An; C Andrews-Pfannkoch; D Baldwin; R M Ballew; A Basu; J Baxendale; L Bayraktaroglu; E M Beasley; K Y Beeson; P V Benos; B P Berman; D Bhandari; S Bolshakov; D Borkova; M R Botchan; J Bouck; P Brokstein; P Brottier; K C Burtis; D A Busam; H Butler; E Cadieu; A Center; I Chandra; J M Cherry; S Cawley; C Dahlke; L B Davenport; P Davies; B de Pablos; A Delcher; Z Deng; A D Mays; I Dew; S M Dietz; K Dodson; L E Doup; M Downes; S Dugan-Rocha; B C Dunkov; P Dunn; K J Durbin; C C Evangelista; C Ferraz; S Ferriera; W Fleischmann; C Fosler; A E Gabrielian; N S Garg; W M Gelbart; K Glasser; A Glodek; F Gong; J H Gorrell; Z Gu; P Guan; M Harris; N L Harris; D Harvey; T J Heiman; J R Hernandez; J Houck; D Hostin; K A Houston; T J Howland; M H Wei; C Ibegwam; M Jalali; F Kalush; G H Karpen; Z Ke; J A Kennison; K A Ketchum; B E Kimmel; C D Kodira; C Kraft; S Kravitz; D Kulp; Z Lai; P Lasko; Y Lei; A A Levitsky; J Li; Z Li; Y Liang; X Lin; X Liu; B Mattei; T C McIntosh; M P McLeod; D McPherson; G Merkulov; N V Milshina; C Mobarry; J Morris; A Moshrefi; S M Mount; M Moy; B Murphy; L Murphy; D M Muzny; D L Nelson; D R Nelson; K A Nelson; K Nixon; D R Nusskern; J M Pacleb; M Palazzolo; G S Pittman; S Pan; J Pollard; V Puri; M G Reese; K Reinert; K Remington; R D Saunders; F Scheeler; H Shen; B C Shue; I Sidén-Kiamos; M Simpson; M P Skupski; T Smith; E Spier; A C Spradling; M Stapleton; R Strong; E Sun; R Svirskas; C Tector; R Turner; E Venter; A H Wang; X Wang; Z Y Wang; D A Wassarman; G M Weinstock; J Weissenbach; S M Williams; K C Worley; D Wu; S Yang; Q A Yao; J Ye; R F Yeh; J S Zaveri; M Zhan; G Zhang; Q Zhao; L Zheng; X H Zheng; F N Zhong; W Zhong; X Zhou; S Zhu; X Zhu; H O Smith; R A Gibbs; E W Myers; G M Rubin; J C Venter
Journal: Science Date: 2000-03-24 Impact factor: 47.728

67 in total

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Authors: Mark Rebeiz; Nick L Reeves; James W Posakony
Journal: Proc Natl Acad Sci U S A Date: 2002-07-09 Impact factor: 11.205

2. Convergent evolution of gene networks by single-gene duplications in higher eukaryotes.

Authors: Gregory D Amoutzias; David L Robertson; Stephen G Oliver; Erich Bornberg-Bauer
Journal: EMBO Rep Date: 2004-02-13 Impact factor: 8.807

3. The Drosophila juvenile hormone receptor candidates methoprene-tolerant (MET) and germ cell-expressed (GCE) utilize a conserved LIXXL motif to bind the FTZ-F1 nuclear receptor.

Authors: Travis J Bernardo; Edward B Dubrovsky
Journal: J Biol Chem Date: 2012-01-16 Impact factor: 5.157

4. A genomewide survey of bHLH transcription factors in the coral Acropora digitifera identifies three novel orthologous families, pearl, amber, and peridot.

Authors: Fuki Gyoja; Takeshi Kawashima; Nori Satoh
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5. Evolution of a genomic regulatory domain: the role of gene co-option and gene duplication in the Enhancer of split complex.

Authors: Elizabeth J Duncan; Peter K Dearden
Journal: Genome Res Date: 2010-05-10 Impact factor: 9.043

10. bHLH-PAS family transcription factor methoprene-tolerant plays a key role in JH action in preventing the premature development of adult structures during larval-pupal metamorphosis.

Authors: R Parthasarathy; Anjiang Tan; Subba R Palli
Journal: Mech Dev Date: 2008-03-27 Impact factor: 1.882