Literature DB >> 10966467

DNA replication fidelity.

T A Kunkel1, K Bebenek.   

Abstract

DNA replication fidelity is a key determinant of genome stability and is central to the evolution of species and to the origins of human diseases. Here we review our current understanding of replication fidelity, with emphasis on structural and biochemical studies of DNA polymerases that provide new insights into the importance of hydrogen bonding, base pair geometry, and substrate-induced conformational changes to fidelity. These studies also reveal polymerase interactions with the DNA minor groove at and upstream of the active site that influence nucleotide selectivity, the efficiency of exonucleolytic proofreading, and the rate of forming errors via strand misalignments. We highlight common features that are relevant to the fidelity of any DNA synthesis reaction, and consider why fidelity varies depending on the enzymes, the error, and the local sequence environment.

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Year:  2000        PMID: 10966467     DOI: 10.1146/annurev.biochem.69.1.497

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  358 in total

1.  Replication fidelity of the supF gene integrated in the thymidine kinase locus of herpes simplex virus type 1.

Authors:  Ying T Hwang; Bu-Yuan Liu; Charles B C Hwang
Journal:  J Virol       Date:  2002-04       Impact factor: 5.103

2.  Arg660Ser mutation in Thermus aquaticus DNA polymerase I suppresses T-->C transitions: implication of wobble base pair formation at the nucleotide incorporation step.

Authors:  K Yoshida; A Tosaka; H Kamiya; T Murate; H Kasai; Y Nimura; M Ogawa; S Yoshida; M Suzuki
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

3.  Mutation spectra of herpes simplex virus type 1 thymidine kinase mutants.

Authors:  Qiaosheng Lu; Ying T Hwang; Charles B C Hwang
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

4.  High-fidelity in vivo replication of DNA base shape mimics without Watson-Crick hydrogen bonds.

Authors:  James C Delaney; Paul T Henderson; Sandra A Helquist; Juan C Morales; John M Essigmann; Eric T Kool
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

5.  Exonuclease-deficient polymerase mutant of herpes simplex virus type 1 induces altered spectra of mutations.

Authors:  Ying T Hwang; Charles B C Hwang
Journal:  J Virol       Date:  2003-03       Impact factor: 5.103

6.  Neighbouring bases in template influence base-pairing of isoguanine.

Authors:  Agnieszka M Maciejewska; Katarzyna D Lichota; Jarosław T Kuśmierek
Journal:  Biochem J       Date:  2003-02-01       Impact factor: 3.857

7.  DNA conformational changes at the primer-template junction regulate the fidelity of replication by DNA polymerase.

Authors:  Kausiki Datta; Neil P Johnson; Peter H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

8.  Translesion replication of benzo[a]pyrene and benzo[c]phenanthrene diol epoxide adducts of deoxyadenosine and deoxyguanosine by human DNA polymerase iota.

Authors:  Ekaterina G Frank; Jane M Sayer; Heiko Kroth; Eiji Ohashi; Haruo Ohmori; Donald M Jerina; Roger Woodgate
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

9.  Role of the LEXE motif of protein-primed DNA polymerases in the interaction with the incoming nucleotide.

Authors:  Eugenia Santos; José M Lázaro; Patricia Pérez-Arnaiz; Margarita Salas; Miguel de Vega
Journal:  J Biol Chem       Date:  2013-12-09       Impact factor: 5.157

Review 10.  Fidelity at the molecular level: lessons from protein synthesis.

Authors:  Hani S Zaher; Rachel Green
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

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