Literature DB >> 10960181

Hydrophobicity: is LogP(o/w) more than the sum of its parts?

G Eugene Kellogg1, D J Abraham.   

Abstract

The empirically calculated parameter LogP(o/w), the log(10) of the coefficient for solvent partitioning between 1-octanol and water, has been used to provide the key data for a unique non-covalent interaction force field called HINT (Hydropathic INTeractions). This experimentally-derived force field encodes entropic as well as enthalpic information and also includes some representation of solvation and desolvation energetics in biomolecular associations. The theoretical basis for the HINT model is discussed. This review includes: 1) discussion of calculational representation of the hydrophobic effect, 2) the rationale for describing the experimental LogP(o/w) based descriptors used in the HINT force field and model as free energy-like, 3) the relationship between hydrophobic fragment constants and partial group electrostatic charge, and 4) the implications of structurally-conserved water molecules on free energy of molecular association. Several recent applications of HINT in structure-based and ligand-based drug discovery are reviewed. Finally, future directions in the HINT model development are proposed.

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Year:  2000        PMID: 10960181     DOI: 10.1016/s0223-5234(00)00167-7

Source DB:  PubMed          Journal:  Eur J Med Chem        ISSN: 0223-5234            Impact factor:   6.514


  67 in total

1.  Substructure and whole molecule approaches for calculating log P.

Authors:  R Mannhold; H van de Waterbeemd
Journal:  J Comput Aided Mol Des       Date:  2001-04       Impact factor: 3.686

2.  Hydropathic analysis of the free energy differences in anthracycline antibiotic binding to DNA.

Authors:  Derek J Cashman; J Neel Scarsdale; Glen E Kellogg
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

3.  Factors influencing protein tyrosine nitration--structure-based predictive models.

Authors:  Alexander S Bayden; Vasily A Yakovlev; Paul R Graves; Ross B Mikkelsen; Glen E Kellogg
Journal:  Free Radic Biol Med       Date:  2010-12-21       Impact factor: 7.376

4.  Inhibition of hendra virus fusion.

Authors:  M Porotto; L Doctor; P Carta; M Fornabaio; O Greengard; G E Kellogg; A Moscona
Journal:  J Virol       Date:  2006-10       Impact factor: 5.103

5.  Paramyxovirus receptor-binding molecules: engagement of one site on the hemagglutinin-neuraminidase protein modulates activity at the second site.

Authors:  Matteo Porotto; Micaela Fornabaio; Olga Greengard; Matthew T Murrell; Glen E Kellogg; Anne Moscona
Journal:  J Virol       Date:  2006-02       Impact factor: 5.103

6.  A second receptor binding site on human parainfluenza virus type 3 hemagglutinin-neuraminidase contributes to activation of the fusion mechanism.

Authors:  Matteo Porotto; Micaela Fornabaio; Glen E Kellogg; Anne Moscona
Journal:  J Virol       Date:  2007-01-17       Impact factor: 5.103

7.  Theoretical calculations of the catalytic triad in short-chain alcohol dehydrogenases/reductases.

Authors:  Osman A B S M Gani; Olayiwola A Adekoya; Laura Giurato; Francesca Spyrakis; Pietro Cozzini; Salvatore Guccione; Jan-Olof Winberg; Ingebrigt Sylte
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

8.  5-Hydroxy-2-(2-phenylethyl)chromone (5-HPEC): a novel non-nitrogenous ligand for 5-HT2B receptor.

Authors:  Dwight A Williams; Saheem A Zaidi; Yan Zhang
Journal:  Bioorg Med Chem Lett       Date:  2014-02-19       Impact factor: 2.823

9.  Developing novel C-4 analogues of pyrrole-based antitubulin agents: weak but critical hydrogen bonding in the colchicine site.

Authors:  Chenxiao Da; Nakul Telang; Kayleigh Hall; Emily Kluball; Peter Barelli; Kara Finzel; Xin Jia; John T Gupton; Susan L Mooberry; Glen E Kellogg
Journal:  Medchemcomm       Date:  2013       Impact factor: 3.597

10.  Predicting the molecular interactions of CRIP1a-cannabinoid 1 receptor with integrated molecular modeling approaches.

Authors:  Mostafa H Ahmed; Glen E Kellogg; Dana E Selley; Martin K Safo; Yan Zhang
Journal:  Bioorg Med Chem Lett       Date:  2014-01-08       Impact factor: 2.823

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