Literature DB >> 10958626

Automation for genomics, part one: preparation for sequencing.

D Meldrum1.   

Abstract

In the past four years, automation for genomics has enabled a 43-fold increase in the total finished human genomic sequence in the world. This two-part noncomprehensive review will provide an overview of different types of automation equipment used in genome sequencing. Part One focuses on equipment involved in DNA preparation, DNA sequencing reactions, and other automated procedures for preparing DNA for running on sequencers or subsequent analysis; it also includes information on the development of these machines at various genome centers. Part Two, to be published in the next issue, will cover sequencing machinery and array technology, and conclude with a look at the future technologies that will revolutionize molecular biology. "Alternate" sequencing technologies (including mass spectrometry, biochips, and single-molecule analysis) will also be examined.

Entities:  

Mesh:

Year:  2000        PMID: 10958626     DOI: 10.1101/gr.101400

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  13 in total

1.  A scalable high-throughput chemical synthesizer.

Authors:  Eric A Livesay; Ying-Horng Liu; Kevin J Luebke; Joel Irick; Yuri Belosludtsev; Simon Rayner; Robert Balog; Stephen Albert Johnston
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

2.  Chemical synthesis of the mouse mitochondrial genome.

Authors:  Daniel G Gibson; Hamilton O Smith; Clyde A Hutchison; J Craig Venter; Chuck Merryman
Journal:  Nat Methods       Date:  2010-10-10       Impact factor: 28.547

3.  MEGAN analysis of metagenomic data.

Authors:  Daniel H Huson; Alexander F Auch; Ji Qi; Stephan C Schuster
Journal:  Genome Res       Date:  2007-01-25       Impact factor: 9.043

4.  A method for preparing DNA sequencing templates using a DNA-binding microplate.

Authors:  Yu Yang; Haroun R Hebron; Jun Hang
Journal:  J Biomol Tech       Date:  2009-07

5.  Census-based rapid and accurate metagenome taxonomic profiling.

Authors:  Amirhossein Shamsaddini; Yang Pan; W Evan Johnson; Konstantinos Krampis; Mariya Shcheglovitova; Vahan Simonyan; Amy Zanne; Raja Mazumder
Journal:  BMC Genomics       Date:  2014-10-21       Impact factor: 3.969

Review 6.  Engineering biological systems using automated biofoundries.

Authors:  Ran Chao; Shekhar Mishra; Tong Si; Huimin Zhao
Journal:  Metab Eng       Date:  2017-06-07       Impact factor: 9.783

7.  Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains.

Authors:  Brian O'Farrell; Jana K Haase; Vimalkumar Velayudhan; Ronan A Murphy; Mark Achtman
Journal:  PLoS One       Date:  2012-10-29       Impact factor: 3.240

8.  Rapid and accurate pyrosequencing of angiosperm plastid genomes.

Authors:  Michael J Moore; Amit Dhingra; Pamela S Soltis; Regina Shaw; William G Farmerie; Kevin M Folta; Douglas E Soltis
Journal:  BMC Plant Biol       Date:  2006-08-25       Impact factor: 4.215

9.  High-throughput isolation of ultra-pure plasmid DNA by a robotic system.

Authors:  Volker Kachel; Georg Sindelar; Stefan Grimm
Journal:  BMC Biotechnol       Date:  2006-02-16       Impact factor: 2.563

10.  MetaSim: a sequencing simulator for genomics and metagenomics.

Authors:  Daniel C Richter; Felix Ott; Alexander F Auch; Ramona Schmid; Daniel H Huson
Journal:  PLoS One       Date:  2008-10-08       Impact factor: 3.240

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