Literature DB >> 10952214

Genomes were forged by massive bombardments with retroelements and retrosequences.

J Brosius1.   

Abstract

Retroposition is an efficient route to move coding regions around the genome 'in search' of novel regulatory elements and to shotgun regulatory elements into the genome 'in search' of new target genes. The templates for such retrogenes are mRNAs, and for regulatory retronuons (nuon = any definable nucleic acid sequence) usually small non-mRNAs (snmRNAs). An example in support of the 'master gene' model for SINEs (short interspersed repetitive elements) is provided with neuronal BC1 RNA. Furthermore, an alternative explanation of LINE (long interspersed repetitive elements) involvement in the generation of SINEs is given. I will also argue that the status of transposable elements with respect to the host resembles more symbiosis than parasitiasis and that host defense is often lenient as if even to 'tolerate or support' retronuons. Finally the paradox of evolution's lack of foresight and the future exaptive use of retronuons is being dealt with by referring to W.F. Doolittle's 'Hierarchical Approaches to Genome Evolution'.

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Year:  1999        PMID: 10952214

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  64 in total

1.  Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae.

Authors:  Colleen T Webb; Svetlana A Shabalina; Aleksey Yu Ogurtsov; Alexey S Kondrashov
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

2.  Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure.

Authors:  T S Rozhdestvensky; A M Kopylov; J Brosius; A Hüttenhofer
Journal:  RNA       Date:  2001-05       Impact factor: 4.942

3.  RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse.

Authors:  A Hüttenhofer; M Kiefmann; S Meier-Ewert; J O'Brien; H Lehrach; J P Bachellerie; J Brosius
Journal:  EMBO J       Date:  2001-06-01       Impact factor: 11.598

4.  Segmental duplications in euchromatic regions of human chromosome 5: a source of evolutionary instability and transcriptional innovation.

Authors:  Anouk Courseaux; Florence Richard; Josiane Grosgeorge; Christine Ortola; Agnes Viale; Claude Turc-Carel; Bernard Dutrillaux; Patrick Gaudray; Jean-Louis Nahon
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

Review 5.  Gene duplication and other evolutionary strategies: from the RNA world to the future.

Authors:  Jürgen Brosius
Journal:  J Struct Funct Genomics       Date:  2003

6.  Retroelement distributions in the human genome: variations associated with age and proximity to genes.

Authors:  Patrik Medstrand; Louie N van de Lagemaat; Dixie L Mager
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

Review 7.  Repetitive elements in genomes of parasitic protozoa.

Authors:  Bill Wickstead; Klaus Ersfeld; Keith Gull
Journal:  Microbiol Mol Biol Rev       Date:  2003-09       Impact factor: 11.056

8.  FB elements can promote exon shuffling: a promoter-less white allele can be reactivated by FB mediated transposition in Drosophila melanogaster.

Authors:  R Moschetti; R M Marsano; P Barsanti; C Caggese; R Caizzi
Journal:  Mol Genet Genomics       Date:  2004-04-02       Impact factor: 3.291

9.  Diversity and evolution of Ty1-copia retroelements in representative tribes of Bambusoideae subfamily.

Authors:  Ming-bing Zhou; Hao Zhong; Qin-hui Zhang; Ke-Xuan Tang; Ding-Qin Tang
Journal:  Genetica       Date:  2010-06-25       Impact factor: 1.082

Review 10.  Detection of gene duplications and block duplications in eukaryotic genomes.

Authors:  Wen-Hsiung Li; Zhenglong Gu; Andre R O Cavalcanti; Anton Nekrutenko
Journal:  J Struct Funct Genomics       Date:  2003
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