Literature DB >> 10946106

Sense from nonsense: how the genetic information of chloroplasts is altered by RNA editing.

R Bock1.   

Abstract

Plastid transcripts can be subject to an RNA processing mechanism changing the identity of individual nucleotides and thus altering the information content of the mRNA. This processing step was termed RNA editing and adds a novel mechanism to the multitude of RNA maturation events required before mRNAs can serve as faithful templates in plastid protein biosynthesis. RNA editing in chloroplasts proceeds by the conversion of individual cytidine residues to uridine and, in some bryophytes, also by the reverse event, uridine-to-cytidine transitions. The discovery of RNA editing in chloroplasts has provided researchers with a wealth of molecular and evolutionary puzzles, many of which are not yet solved. However, recent work employing chloroplast transformation technologies has shed some light on the molecular mechanisms by which RNA editing sites are recognized with extraordinarily high precision. Also, extensive phylogenetic studies have provided intriguing insights in the evolutionary dynamics with which editing sites may come and go. This review summarizes the state-of-the-art in the field of chloroplast RNA editing, discusses mechanistic and evolutionary aspects of editing and points out some of the important open questions surrounding this enigmatic RNA processing step.

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Year:  2000        PMID: 10946106     DOI: 10.1016/s0300-9084(00)00610-6

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  54 in total

1.  Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system.

Authors:  T Hirose; M Sugiura
Journal:  EMBO J       Date:  2001-03-01       Impact factor: 11.598

2.  Transcript abundance supercedes editing efficiency as a factor in developmental variation of chloroplast gene expression.

Authors:  Nemo M Peeters; Maureen R Hanson
Journal:  RNA       Date:  2002-04       Impact factor: 4.942

3.  RNA editing in hornwort chloroplasts makes more than half the genes functional.

Authors:  Masanori Kugita; Yuhei Yamamoto; Takeshi Fujikawa; Tohoru Matsumoto; Koichi Yoshinaga
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

Review 4.  Eukaryotic genome evolution: rearrangement and coevolution of compartmentalized genetic information.

Authors:  Reinhold G Herrmann; Rainer M Maier; Christian Schmitz-Linneweber
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

5.  Surprising features of plastid ndhD transcripts: addition of non-encoded nucleotides and polysome association of mRNAs with an unedited start codon.

Authors:  Aitor Zandueta-Criado; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2004-01-26       Impact factor: 16.971

6.  Cross-competition in transgenic chloroplasts expressing single editing sites reveals shared cis elements.

Authors:  Anne-Laure Chateigner-Boutin; Maureen R Hanson
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

7.  Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts.

Authors:  Tetsuya Miyamoto; Junichi Obokata; Masahiro Sugiura
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

8.  Rapid evolution of RNA editing sites in a small non-essential plastid gene.

Authors:  Andreas Fiebig; Sandra Stegemann; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2004-07-07       Impact factor: 16.971

9.  Complex cis-elements determine an RNA editing site in pea mitochondria.

Authors:  Mizuki Takenaka; Julia Neuwirt; Axel Brennicke
Journal:  Nucleic Acids Res       Date:  2004-08-04       Impact factor: 16.971

10.  RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA.

Authors:  Rikard Fristedt; Lars B Scharff; Cornelia A Clarke; Qin Wang; Chentao Lin; Sabeeha S Merchant; Ralph Bock
Journal:  Plant Physiol       Date:  2013-11-08       Impact factor: 8.340

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