Literature DB >> 10940223

Review: model peptides and the physicochemical approach to beta-amyloids.

D G Lynn1, S C Meredith.   

Abstract

beta-Amyloid peptides are the main protein components of neuritic plaques and may be important in the pathogenesis of Alzheimer's Disease. The determination of the structure of beta-amyloid fibrils poses a challenge because of the limited solubility of beta-amyloid peptides and the noncrystalline nature of fibrils formed from these peptides. In this paper, we describe several physicochemical approaches which have been used to examine fibrils and the fibrillogenesis of peptide models of beta-amyloid. Recent advances in solid state NMR, such as the DRAWS pulse sequence, have made this approach a particularly attractive one for peptides such as beta-amyloid, which are not yet amenable to high-resolution solution phase NMR and crystallography. The application of solid state NMR techniques has yielded information on a model peptide comprising residues 10-35 of human beta-amyloid and indicates that in fibrils, this peptide assumes a parallel beta-strand conformation, with all residues in exact register. In addition, we discuss the use of block copolymers of Abeta peptides and polyethylene glycol as probes for the pathways of fibrillogenesis. These methods can be combined with other new methods, such as high-resolution synchrotron X-ray diffraction and small angle neutron and X-ray scattering, to yield structural data of relevance not only to disease, but to the broader question of protein folding and self-assembly. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10940223     DOI: 10.1006/jsbi.2000.4287

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  23 in total

1.  Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  Short peptide amyloid organization: stabilities and conformations of the islet amyloid peptide NFGAIL.

Authors:  David Zanuy; Buyong Ma; Ruth Nussinov
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

3.  Thermodynamics and stability of a beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

4.  Assembly and kinetic folding pathways of a tetrameric beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

5.  Protein folding pathways and kinetics: molecular dynamics simulations of beta-strand motifs.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

6.  Electric field-driven disruption of a native beta-sheet protein conformation and generation of a helix-structure.

Authors:  Pedro Ojeda-May; Martin E Garcia
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

7.  Molecular origin of the self-assembly of lanreotide into nanotubes: a mutational approach.

Authors:  Céline Valéry; Emilie Pouget; Anjali Pandit; Jean-Marc Verbavatz; Luc Bordes; Isabelle Boisdé; Roland Cherif-Cheikh; Franck Artzner; Maité Paternostre
Journal:  Biophys J       Date:  2007-11-09       Impact factor: 4.033

8.  Gas-phase structure of amyloid-β (12-28) peptide investigated by infrared spectroscopy, electron capture dissociation and ion mobility mass spectrometry.

Authors:  Thi Nga Le; Jean Christophe Poully; Frédéric Lecomte; Nicolas Nieuwjaer; Bruno Manil; Charles Desfrançois; Fabien Chirot; Jerome Lemoine; Philippe Dugourd; Guillaume van der Rest; Gilles Grégoire
Journal:  J Am Soc Mass Spectrom       Date:  2013-09-17       Impact factor: 3.109

9.  Monte Carlo simulations of proteins in cages: influence of confinement on the stability of intermediate states.

Authors:  Pedro Ojeda; Martin E Garcia; Aurora Londoño; Nan-Yow Chen
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

10.  Comparative fibril formation of analogs corresponding to the (12-24) segment of the β-amyloid peptide.

Authors:  Luciana Malavolta; Clóvis R Nakaie
Journal:  Neurol Sci       Date:  2011-09-09       Impact factor: 3.307

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