Literature DB >> 10930842

Purification, crystallization and preliminary X-ray study of orotidine 5'-monophosphate decarboxylase.

N Wu1, D Christendat, A Dharamsi, E F Pai.   

Abstract

Orotidine-5'-monophosphate decarboxylase (ODCase) from Methanobacterium thermoautotrophicum has been crystallized with and without the inhibitor 6-azaUMP by the vapour-diffusion method. In the absence of the inhibitor, the protein crystallizes in space group P4(1)2(1)2 (unit-cell parameters a = b = 56.9, c = 124.5 A) with one molecule per asymmetric unit; the crystals diffract to 1.8 A resolution. In the presence of the inhibitor, the protein crystals are monoclinic, space group P2(1) (unit-cell parameters a = 73.0, b = 98.6, c = 73.3 A, gamma = 104.0 degrees ), with four molecules in the asymmetric unit; the crystals diffract to 1.5 A resolution.

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Year:  2000        PMID: 10930842     DOI: 10.1107/s090744490000576x

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  13 in total

1.  Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism.

Authors:  Masahiro Fujihashi; Kazuya Mito; Emil F Pai; Kunio Miki
Journal:  J Biol Chem       Date:  2013-02-10       Impact factor: 5.157

2.  Crystal Structures of the SpoIID Lytic Transglycosylases Essential for Bacterial Sporulation.

Authors:  Salvatore Nocadello; George Minasov; Ludmilla S Shuvalova; Ievgeniia Dubrovska; Elisabetta Sabini; Wayne F Anderson
Journal:  J Biol Chem       Date:  2016-05-18       Impact factor: 5.157

3.  Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.

Authors:  Masahiro Fujihashi; Toyokazu Ishida; Shingo Kuroda; Lakshmi P Kotra; Emil F Pai; Kunio Miki
Journal:  J Am Chem Soc       Date:  2013-11-11       Impact factor: 15.419

4.  Sensor Domain of Histidine Kinase VxrA of Vibrio cholerae- A Hairpin-swapped Dimer and its Conformational Change.

Authors:  Kemin Tan; Jennifer K Teschler; Ruiying Wu; Robert P Jedrzejczak; Min Zhou; Ludmilla A Shuvalova; Michael J Endres; Lucas F Welk; Keehwan Kwon; Wayne F Anderson; Karla J F Satchell; Fitnat H Yildiz; Andrzej Joachimiak
Journal:  J Bacteriol       Date:  2021-03-22       Impact factor: 3.490

5.  Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase.

Authors:  Masahiro Fujihashi; Lianhu Wei; Lakshmi P Kotra; Emil F Pai
Journal:  J Mol Biol       Date:  2009-02-21       Impact factor: 5.469

6.  Insights into glycogen metabolism in chemolithoautotrophic bacteria from distinctive kinetic and regulatory properties of ADP-glucose pyrophosphorylase from Nitrosomonas europaea.

Authors:  Matías Machtey; Misty L Kuhn; Diane A Flasch; Mabel Aleanzi; Miguel A Ballicora; Alberto A Iglesias
Journal:  J Bacteriol       Date:  2012-09-07       Impact factor: 3.490

7.  Crystal structure of Bacillus subtilis YckF: structural and functional evolution.

Authors:  R Sanishvili; R Wu; D E Kim; J D Watson; F Collart; A Joachimiak
Journal:  J Struct Biol       Date:  2004-10       Impact factor: 2.867

8.  Substrate Recognition of MARTX Ras/Rap1-Specific Endopeptidase.

Authors:  Marco Biancucci; Amy E Rabideau; Zeyu Lu; Alex R Loftis; Bradley L Pentelute; Karla J F Satchell
Journal:  Biochemistry       Date:  2017-05-11       Impact factor: 3.321

9.  Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid.

Authors:  Elzbieta Nowak; Wojciech Potrzebowski; Petr V Konarev; Jason W Rausch; Marion K Bona; Dmitri I Svergun; Janusz M Bujnicki; Stuart F J Le Grice; Marcin Nowotny
Journal:  Nucleic Acids Res       Date:  2013-02-04       Impact factor: 16.971

10.  N-terminal autoprocessing and acetylation of multifunctional-autoprocessing repeats-in-toxins (MARTX) Makes Caterpillars Floppy-like effector is stimulated by adenosine diphosphate (ADP)-Ribosylation Factor 1 in advance of Golgi fragmentation.

Authors:  Alfa Herrera; John Muroski; Ranjan Sengupta; Hong Hanh Nguyen; Shivangi Agarwal; Rachel R Ogorzalek Loo; Seema Mattoo; Joseph A Loo; Karla J F Satchell
Journal:  Cell Microbiol       Date:  2019-11-15       Impact factor: 4.115

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