Literature DB >> 10926522

Solution conformation and amyloid-like fibril formation of a polar peptide derived from a beta-hairpin in the OspA single-layer beta-sheet.

S Ohnishi1, A Koide, S Koide.   

Abstract

A 23-residue peptide termed BH(9-10) was designed based on a beta-hairpin segment of the single-layer beta-sheet region of Borrelia OspA protein. The peptide contains a large number of charged amino acid residues, and it does not follow the amphipathic pattern that is commonly found in natural beta-sheets. In aqueous solution, the peptide was highly soluble and flexible, with a propensity to form a non-native beta-turn. Trifluoroethanol (TFE) stabilized a native-like beta-turn in BH(9-10). TFE also decreased the level of solubility of the peptide, resulting in peptide precipitation. The precipitation process accompanied a conformational conversion to a beta-sheet structure, as judged with circular dichroism spectroscopy. The precipitate was found to be fibrils similar to those associated with human amyloid diseases. The fibrillization kinetics depended on peptide and TFE concentrations, and had a nucleation step followed by an assembly step. The fibrillization was reversible, and the dissociation reaction involved two phases. TFE appears to induce the fibrils by stabilizing a beta-sheet conformation of the peptide that optimally satisfies hydrogen bonding and electrostatic complementarity. This TFE-induced fibrillization is quite unusual, because most amyloidogenic peptides form fibrils in aqueous solution and TFE disrupts these fibrils. Nevertheless, the BH(9-10) fibrils have similar structure to other fibrils, supporting the emerging idea that polypeptides possess an intrinsic ability to form amyloid-like fibrils. The high level of solubility of BH(9-10), the ability to precisely control fibril formation and dissociation, and the high-resolution structure of the same sequence in the beta-hairpin conformation in the OspA protein provide a tractable experimental system for studying the fibril formation mechanism. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10926522     DOI: 10.1006/jmbi.2000.3980

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  19 in total

1.  Mutations in the B1 domain of protein G that delay the onset of amyloid fibril formation in vitro.

Authors:  Marina Ramírez-Alvarado; Melanie J Cocco; Lynne Regan
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

2.  Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering.

Authors:  Koki Makabe; Valentina Tereshko; Grzegorz Gawlak; Shude Yan; Shohei Koide
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

3.  Atomic structures of peptide self-assembly mimics.

Authors:  Koki Makabe; Dan McElheny; Valentia Tereshko; Aaron Hilyard; Grzegorz Gawlak; Shude Yan; Akiko Koide; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-08       Impact factor: 11.205

4.  High-resolution structure of a self-assembly-competent form of a hydrophobic peptide captured in a soluble beta-sheet scaffold.

Authors:  Koki Makabe; Matthew Biancalana; Shude Yan; Valentina Tereshko; Grzegorz Gawlak; Hélène Miller-Auer; Stephen C Meredith; Shohei Koide
Journal:  J Mol Biol       Date:  2008-03-04       Impact factor: 5.469

5.  The roles of turn formation and cross-strand interactions in fibrillization of peptides derived from the OspA single-layer beta-sheet.

Authors:  S Ohnishi; A Koide; S Koide
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

6.  Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.

Authors:  Shude Yan; Grzegorz Gawlak; Koki Makabe; Valentina Tereshko; Akiko Koide; Shohei Koide
Journal:  J Mol Biol       Date:  2007-02-07       Impact factor: 5.469

Review 7.  Role of infection in the pathogenesis of Alzheimer's disease: implications for treatment.

Authors:  Clive Holmes; Darren Cotterell
Journal:  CNS Drugs       Date:  2009-12       Impact factor: 5.749

8.  High-throughput analysis of the protein sequence-stability landscape using a quantitative yeast surface two-hybrid system and fragment reconstitution.

Authors:  Sanjib Dutta; Akiko Koide; Shohei Koide
Journal:  J Mol Biol       Date:  2008-07-22       Impact factor: 5.469

9.  Molecular mechanism of thioflavin-T binding to the surface of beta-rich peptide self-assemblies.

Authors:  Matthew Biancalana; Koki Makabe; Akiko Koide; Shohei Koide
Journal:  J Mol Biol       Date:  2008-11-14       Impact factor: 5.469

10.  The role of disulfide bond in the amyloidogenic state of beta(2)-microglobulin studied by heteronuclear NMR.

Authors:  Hidenori Katou; Takashi Kanno; Masaru Hoshino; Yoshihisa Hagihara; Hiroyuki Tanaka; Tomoji Kawai; Kazuhiro Hasegawa; Hironobu Naiki; Yuji Goto
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

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