Literature DB >> 10917536

Mimicry of ice structure by surface hydroxyls and water of a beta-helix antifreeze protein.

Y C Liou1, A Tocilj, P L Davies, Z Jia.   

Abstract

Insect antifreeze proteins (AFP) are much more effective than fish AFPs at depressing solution freezing points by ice-growth inhibition. AFP from the beetle Tenebrio molitor is a small protein (8.4 kDa) composed of tandem 12-residue repeats (TCTxSxxCxxAx). Here we report its 1.4-A resolution crystal structure, showing that this repetitive sequence translates into an exceptionally regular beta-helix. Not only are the 12-amino-acid loops almost identical in the backbone, but also the conserved side chains are positioned in essentially identical orientations, making this AFP perhaps the most regular protein structure yet observed. The protein has almost no hydrophobic core but is stabilized by numerous disulphide and hydrogen bonds. On the conserved side of the protein, threonine-cysteine-threonine motifs are arrayed to form a flat beta-sheet, the putative ice-binding surface. The threonine side chains have exactly the same rotameric conformation and the spacing between OH groups is a near-perfect match to the ice lattice. Together with tightly bound co-planar external water, three ranks of oxygen atoms form a two-dimensional array, mimicking an ice section.

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Year:  2000        PMID: 10917536     DOI: 10.1038/35018604

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  94 in total

1.  Modeling Pseudomonas syringae ice-nucleation protein as a beta-helical protein.

Authors:  S P Graether; Z Jia
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

2.  Structure of type I antifreeze protein and mutants in supercooled water.

Authors:  S P Graether; C M Slupsky; P L Davies; B D Sykes
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Dynamics of antifreeze glycoproteins in the presence of ice.

Authors:  Nelly M Tsvetkova; Brian L Phillips; Viswanathan V Krishnan; Robert E Feeney; William H Fink; John H Crowe; Subhash H Risbud; Fern Tablin; Yin Yeh
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

4.  Distinct macroscopic structures developed from solutions of chemical compounds and periodic proteins.

Authors:  Kiyotaka Shiba; Takako Honma; Tamiko Minamisawa; Keiichi Nishiguchi; Tetsuo Noda
Journal:  EMBO Rep       Date:  2003-02       Impact factor: 8.807

5.  De novo designed peptide-based amyloid fibrils.

Authors:  Manuela López De La Paz; Kenneth Goldie; Jesús Zurdo; Emmanuel Lacroix; Christopher M Dobson; Andreas Hoenger; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-27       Impact factor: 11.205

6.  Freezing of a fish antifreeze protein results in amyloid fibril formation.

Authors:  Steffen P Graether; Carolyn M Slupsky; Brian D Sykes
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

Review 7.  Plants in a cold climate.

Authors:  Maggie Smallwood; Dianna J Bowles
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-07-29       Impact factor: 6.237

Review 8.  Structure and function of antifreeze proteins.

Authors:  Peter L Davies; Jason Baardsnes; Michael J Kuiper; Virginia K Walker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-07-29       Impact factor: 6.237

9.  Computational study on the function of water within a beta-helix antifreeze protein dimer and in the process of ice-protein binding.

Authors:  Zuoyin Yang; Yanxia Zhou; Kai Liu; Yuhua Cheng; Ruozhuang Liu; Guangju Chen; Zongchao Jia
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

10.  Analysis of ice-binding sites in fish type II antifreeze protein by quantum mechanics.

Authors:  Yuhua Cheng; Zuoyin Yang; Hongwei Tan; Ruozhuang Liu; Guangju Chen; Zongchao Jia
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

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