Literature DB >> 10913152

Synthetic zinc finger transcription factor action at an endogenous chromosomal site. Activation of the human erythropoietin gene.

L Zhang1, S K Spratt, Q Liu, B Johnstone, H Qi, E E Raschke, A C Jamieson, E J Rebar, A P Wolffe, C C Case.   

Abstract

We have targeted the activation of an endogenous chromosomal locus including the human erythropoietin gene using synthetic transcription factors. These transcription factors are targeted to particular DNA sequences in the 5'-flanking region of the erythropoietin gene through engineering of a zinc finger DNA binding domain. The DNA binding domain is linked to a VP16 transcriptional activation domain. We find that these synthetic transcription factors invariably activate transiently transfected templates in which sequences within the 5' flank of the erythropoietin gene are fused to a luciferase reporter. The efficiency of activation under these circumstances at a defined site is dependent on DNA binding affinity. In contrast, only a subset of these same zinc finger proteins is able to activate the endogenous chromosomal locus. The activity of these proteins is influenced by their capacity to gain access to their recognition elements within the chromatin infrastructure. Zinc finger transcription factors will provide a powerful tool to probe the determinants of chromatin accessibility and remodeling within endogenous chromosomal loci.

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Year:  2000        PMID: 10913152     DOI: 10.1074/jbc.M005341200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  50 in total

1.  Site-selective in vivo targeting of cytosine-5 DNA methylation by zinc-finger proteins.

Authors:  Christopher D Carvin; Rebecca D Parr; Michael P Kladde
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

2.  Zinc-finger protein-targeted gene regulation: genomewide single-gene specificity.

Authors:  Siyuan Tan; Dmitry Guschin; Albert Davalos; Ya-Li Lee; Andrew W Snowden; Yann Jouvenot; H Steven Zhang; Katherine Howes; Andrew R McNamara; Albert Lai; Chris Ullman; Lindsey Reynolds; Michael Moore; Mark Isalan; Lutz-Peter Berg; Bradley Campos; Hong Qi; S Kaye Spratt; Casey C Case; Carl O Pabo; Judith Campisi; Philip D Gregory
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-26       Impact factor: 11.205

Review 3.  Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities.

Authors:  Taco G Uil; Hidde J Haisma; Marianne G Rots
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

4.  Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection.

Authors:  Jessica A Hurt; Stacey A Thibodeau; Andrew S Hirsh; Carl O Pabo; J Keith Joung
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

5.  Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases.

Authors:  Marina Bibikova; Mary Golic; Kent G Golic; Dana Carroll
Journal:  Genetics       Date:  2002-07       Impact factor: 4.562

6.  Repression of the HIV-1 5' LTR promoter and inhibition of HIV-1 replication by using engineered zinc-finger transcription factors.

Authors:  Lindsey Reynolds; Christopher Ullman; Michael Moore; Mark Isalan; Michelle J West; Paul Clapham; Aaron Klug; Yen Choo
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

7.  Re-programming DNA-binding specificity in zinc finger proteins for targeting unique address in a genome.

Authors:  Abhinav Grover; Akshay Pande; Krishna Choudhary; Kriti Gupta; Durai Sundar
Journal:  Syst Synth Biol       Date:  2011-02-19

8.  Gene regulation in planta by plant-derived engineered zinc finger protein transcription factors.

Authors:  Rachel Holmes-Davis; Guofu Li; Andrew C Jamieson; Edward J Rebar; Qiang Liu; Yanhong Kong; Casey C Case; Philip D Gregory
Journal:  Plant Mol Biol       Date:  2005-02       Impact factor: 4.076

9.  Phenotypic alteration and target gene identification using combinatorial libraries of zinc finger proteins in prokaryotic cells.

Authors:  Kyung-Soon Park; Young-Soon Jang; Horim Lee; Jin-Soo Kim
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

10.  Drug-inducible and simultaneous regulation of endogenous genes by single-chain nuclear receptor-based zinc-finger transcription factor gene switches.

Authors:  L Magnenat; L J Schwimmer; C F Barbas
Journal:  Gene Ther       Date:  2008-06-05       Impact factor: 5.250

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