Literature DB >> 10907739

Effects of N7-methylation, N7-platination, and C8-hydroxylation of guanine on H-bond formation with cytosine: platinum coordination strengthens the Watson-Crick pair.

R K Sigel1, E Freisinger, B Lippert.   

Abstract

The hydrogen bonding properties of 1-methylcytosine (1-MeC) with the following guanine base derivatives have been studied in DMSO-d6, applying concentration-dependent 1H NMR spectroscopy: 9-ethylguanine, 7,9-dimethylguanine (7,9-DimeGH+), and 7,8-dihydro-8-oxo-9-methylguanine (8-O-9-MeGH), as well as three 9-ethylguanine complexes carrying different Pt(II) moieties at the N7 position. The association constants K for the Watson-Crick pairing schemes are by a factor 2-3 higher in the cases of platinated guanine complexes compared to the Watson-Crick pair between 9-ethylguanine and 1-methylcytosine (K = 6.9 +/- 1.3 M(-1)). Similar enhanced stabilities are observed for the pairs formed between 1-MeC and 7,9-DimeGH+ or 8-O-9-MeGH. The increase in N1H acidity of the guanine derivative upon modification at the N7 or C8 positions can be correlated with the association constants K; the result is a bell-shaped curve meaning that acidification initially stabilizes hydrogen bond formation up to a certain maximum; further acidification then leads to a destabilization. For two of the examples studied in solution, hydrogen bonding according to Watson-Crick between N7-platinated 9-ethylguanine and 1-methylcytosine has also been established by X-ray crystallography.

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Year:  2000        PMID: 10907739     DOI: 10.1007/pl00010657

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.862


  19 in total

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2.  H8 chemical shifts in oligonucleotide cross-linked at a GpG sequence by cis-Pt(NH3)2(2+): a clue to the adduct structure.

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4.  Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement.

Authors:  J L Sussman; S R Holbrook; R W Warrant; G M Church; S H Kim
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5.  Octahedral complexes of anti-cancer Pt(IV)(cyclohexyldiamine) agents with 9-methylguanine.

Authors:  H K Choi; S K Huang; R Bau
Journal:  Biochem Biophys Res Commun       Date:  1988-11-15       Impact factor: 3.575

6.  The influence of Li+, Na+, Mg2+, Ca2+, and Zn2+ ions on the hydrogen bonds of the Watson-Crick base pairs.

Authors:  E H Anwander; M M Probst; B M Rode
Journal:  Biopolymers       Date:  1990 Mar-Apr       Impact factor: 2.505

7.  A d(GpG)-platinated decanucleotide duplex is kinked. An extended NMR and molecular mechanics study.

Authors:  F Herman; J Kozelka; V Stoven; E Guittet; J P Girault; T Huynh-Dinh; J Igolen; J Y Lallemand; J C Chottard
Journal:  Eur J Biochem       Date:  1990-11-26

8.  The effect of ionic strength on melting of DNA modified by platinum(II) complexes.

Authors:  R Zaludová; V Kleinwächter; V Brabec
Journal:  Biophys Chem       Date:  1996-06-11       Impact factor: 2.352

9.  The assisted self-association of ATP4- by a poly(amino acid) [poly(Lys)] and its significance for cell organelles that contain high concentrations of nucleotides.

Authors:  H Sigel; N A Corfù
Journal:  Eur J Biochem       Date:  1996-09-15

10.  A proton nuclear-magnetic-resonance study of self-stacking in purine and pyrimidine nucleosides and nucleotides.

Authors:  P R Mitchell; H Sigel
Journal:  Eur J Biochem       Date:  1978-07-17
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2.  Binding of transition metal complexes to guanine and guanine-cytosine: hydrogen bonding and covalent effects.

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Journal:  J Biol Inorg Chem       Date:  2005-10-14       Impact factor: 3.358

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Authors:  Michèle C Erat; Roland K O Sigel
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4.  Canonical and unconventional pairing schemes between bis(nucleobase) complexes of trans-a2PtII: artificial nucleobase quartets and C-H...N bonds.

Authors:  Eva Freisinger; Irene B Rother; Marc Sven Luth; Bernhard Lippert
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

5.  Interguanine hydrogen-bonding patterns in adducts with water and Zn-purine complexes (purine is 9-methyladenine and 9-methylguanine). Unexpected preference of Zn(II) for adenine-N7 over guanine-N7.

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Journal:  J Biol Inorg Chem       Date:  2007-02-20       Impact factor: 3.862

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7.  Diversity of cobalamin riboswitches in the corrinoid-producing organohalide respirer Desulfitobacterium hafniense.

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8.  Mg(2+)-induced conformational changes in the btuB riboswitch from E. coli.

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