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Literature DB >> 10906223

Extensive homologous recombination among widely divergent TT viruses.

Abstract

Analyses of a collection of full-length TT virus genomes showed nearly half of them to be recombinant. The results were highly significant and revealed homologous recombination both within and among genotypes, often involving extremely divergent lineages. Recombination breakpoints were significantly more common in the noncoding region of the TT virus genome than in the coding region.

Entities: Species

Mesh：

Year: 2000 PMID： 10906223 PMCID： PMC112290 DOI： 10.1128/jvi.74.16.7666-7670.2000

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

24 in total

1. Widespread intra-serotype recombination in natural populations of dengue virus.

Authors: M Worobey; A Rambaut; E C Holmes
Journal: Proc Natl Acad Sci U S A Date: 1999-06-22 Impact factor: 11.205

2. Analyses of TT virus full-length genomic sequences.

Authors: J C Erker; T P Leary; S M Desai; M L Chalmers; I K Mushahwar
Journal: J Gen Virol Date: 1999-07 Impact factor: 3.891

3. High prevalence of TT virus (TTV) infection in patients on maintenance hemodialysis: frequent mixed infections with different genotypes and lack of evidence of associated liver disease.

Authors: X Forns; P Hegerich; A Darnell; S U Emerson; R H Purcell; J Bukh
Journal: J Med Virol Date: 1999-11 Impact factor: 2.327

4. Marked genomic heterogeneity and frequent mixed infection of TT virus demonstrated by PCR with primers from coding and noncoding regions.

Authors: H Okamoto; M Takahashi; T Nishizawa; M Ukita; M Fukuda; F Tsuda; Y Miyakawa; M Mayumi
Journal: Virology Date: 1999-07-05 Impact factor: 3.616

5. TT virus sequence heterogeneity in vivo: evidence for co-infection with multiple genetic types.

Authors: J K Ball; R Curran; S Berridge; A M Grabowska; C L Jameson; B J Thomson; W L Irving; P M Sharp
Journal: J Gen Virol Date: 1999-07 Impact factor: 3.891

6. Sequence diversity of TT virus in geographically dispersed human populations.

Authors: L E Prescott; D M MacDonald; F Davidson; J Mokili; D I Pritchard; D E Arnot; E M Riley; B M Greenwood; S Hamid; A A Saeed; M O McClure; D B Smith; P Simmonds
Journal: J Gen Virol Date: 1999-07 Impact factor: 3.891

7. TT virus infection is widespread in the general populations from different geographic regions.

Authors: K Abe; T Inami; K Asano; C Miyoshi; N Masaki; S Hayashi; K i Ishikawa; Y Takebe; K M Win; A R El-Zayadi; K H Han; D Y Zhang
Journal: J Clin Microbiol Date: 1999-08 Impact factor: 5.948

8. Complete circular DNA genome of a TT virus variant (isolate name SANBAN) and 44 partial ORF2 sequences implicating a great degree of diversity beyond genotypes.

Authors: M Hijikata; K Takahashi; S Mishiro
Journal: Virology Date: 1999-07-20 Impact factor: 3.616

9. Improved detection systems for TT virus reveal high prevalence in humans, non-human primates and farm animals.

Authors: Thomas P Leary; James C Erker; Michelle L Chalmers; Suresh M Desai; Isa K Mushahwar
Journal: J Gen Virol Date: 1999-08 Impact factor: 3.891

10. Quasispecies of TT virus (TTV) with sequence divergence in hypervariable regions of the capsid protein in chronic TTV infection.

Authors: T Nishizawa; H Okamoto; F Tsuda; T Aikawa; Y Sugai; K Konishi; Y Akahane; M Ukita; T Tanaka; Y Miyakawa; M Mayumi
Journal: J Virol Date: 1999-11 Impact factor: 5.103

14 in total

1. Isolation of multiple TT virus genotypes from spleen biopsy tissue from a Hodgkin's disease patient: genome reorganization and diversity in the hypervariable region.

Authors: Ilijas Jelcic; Agnes Hotz-Wagenblatt; Andreas Hunziker; Harald Zur Hausen; Ethel-Michele de Villiers
Journal: J Virol Date: 2004-07 Impact factor: 5.103

2. Molecular detection method for all known genotypes of TT virus (TTV) and TTV-like viruses in thalassemia patients and healthy individuals.

Authors: Yu-Wen Hu; Moslih I Al-Moslih; Mahmoud Talib Al Ali; Shabnam Rahimi Khameneh; Heather Perkins; Francisco Diaz-Mitoma; Jean Nicholas Roy; Samra Uzicanin; Earl G Brown
Journal: J Clin Microbiol Date: 2005-08 Impact factor: 5.948

3. Extensive homologous recombination in classical swine fever virus: A re-evaluation of homologous recombination events in the strain AF407339.

Authors: Youhua Chen; You-Fang Chen
Journal: Saudi J Biol Sci Date: 2014-01-04 Impact factor: 4.219

Review 4. Molecular properties, biology, and clinical implications of TT virus, a recently identified widespread infectious agent of humans.

Authors: M Bendinelli; M Pistello; F Maggi; C Fornai; G Freer; M L Vatteroni
Journal: Clin Microbiol Rev Date: 2001-01 Impact factor: 26.132

10. A comparison of synonymous codon usage bias patterns in DNA and RNA virus genomes: quantifying the relative importance of mutational pressure and natural selection.

Authors: Youhua Chen
Journal: Biomed Res Int Date: 2013-10-02 Impact factor: 3.411