Literature DB >> 10890007

Use of dimethyl sulfate to probe RNA structure in vivo.

S E Wells1, J M Hughes, A H Igel, M Ares.   

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Year:  2000        PMID： 10890007     DOI： 10.1016/s0076-6879(00)18071-1

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  66 in total

1.  RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo.

Authors:  Christina Waldsich; Rupert Grossberger; Renée Schroeder
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

2.  DEAD-box protein facilitated RNA folding in vivo.

Authors:  Andreas Liebeg; Oliver Mayer; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 3.  Small molecule targeting of RNA structures in neurological disorders.

Authors:  Alicia J Angelbello; Jonathan L Chen; Matthew D Disney
Journal:  Ann N Y Acad Sci       Date:  2019-04-09       Impact factor: 5.691

4.  In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

Authors:  Yiliang Ding; Yin Tang; Chun Kit Kwok; Yu Zhang; Philip C Bevilacqua; Sarah M Assmann
Journal:  Nature       Date:  2013-11-24       Impact factor: 49.962

5.  Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data.

Authors:  Yang Wu; Binbin Shi; Xinqiang Ding; Tong Liu; Xihao Hu; Kevin Y Yip; Zheng Rong Yang; David H Mathews; Zhi John Lu
Journal:  Nucleic Acids Res       Date:  2015-07-13       Impact factor: 16.971

6.  StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.

Authors:  Yin Tang; Emil Bouvier; Chun Kit Kwok; Yiliang Ding; Anton Nekrutenko; Philip C Bevilacqua; Sarah M Assmann
Journal:  Bioinformatics       Date:  2015-04-16       Impact factor: 6.937

Review 7.  Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.

Authors:  Chun Kit Kwok; Giovanni Marsico; Shankar Balasubramanian
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-07-02       Impact factor: 10.005

8.  The cellular environment stabilizes adenine riboswitch RNA structure.

Authors:  Jillian Tyrrell; Jennifer L McGinnis; Kevin M Weeks; Gary J Pielak
Journal:  Biochemistry       Date:  2013-11-20       Impact factor: 3.162

9.  Probing Transcriptome-Wide RNA Structural Changes Dependent on the DEAD-box Helicase Dbp2.

Authors:  Yu-Hsuan Lai; Elizabeth J Tran
Journal:  Methods Mol Biol       Date:  2021

10.  mRNA secondary structures fold sequentially but exchange rapidly in vivo.

Authors:  Elisabeth M Mahen; Peter Y Watson; Joseph W Cottrell; Martha J Fedor
Journal:  PLoS Biol       Date:  2010-02-09       Impact factor: 8.029
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