Literature DB >> 10877849

Interactive construction of residue-based diagrams of proteins: the RbDe web service.

K Konvicka1, F Campagne, H Weinstein.   

Abstract

We announce the Residue-based Diagram Editor (RbDe) web service that allows online construction of residue-based diagrams and the creation of stored diagram libraries. The service has been tuned for the construction of snake-like diagrams (for transmembrane proteins) but can be used to render any protein for which defined secondary structure data or hypotheses are available. RbDe is freely available through the Internet from our web site: http://transport.physbio. mssm.edu/rbde/RbDe.html. Licenses for intranet uses can be obtained upon request.

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Year:  2000        PMID: 10877849     DOI: 10.1093/protein/13.6.395

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  12 in total

1.  GPCRDB information system for G protein-coupled receptors.

Authors:  Florence Horn; Emmanuel Bettler; Laerte Oliveira; Fabien Campagne; Fred E Cohen; Gerrit Vriend
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Building protein diagrams on the web with the residue-based diagram editor RbDe.

Authors:  Lucy Skrabanek; Fabien Campagne; Harel Weinstein
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Progesterone binding to the alpha1-subunit of the Na/K-ATPase on the cell surface: insights from computational modeling.

Authors:  Gene A Morrill; Adele B Kostellow; Amir Askari
Journal:  Steroids       Date:  2007-09-02       Impact factor: 2.668

4.  Conformational study on cyclic melanocortin ligands and new insight into their binding mode at the MC4 receptor.

Authors:  Paolo Grieco; Diego Brancaccio; Ettore Novellino; Victor J Hruby; Alfonso Carotenuto
Journal:  Eur J Med Chem       Date:  2011-05-23       Impact factor: 6.514

Review 5.  Glutamate Transporters/Na(+), K(+)-ATPase Involving in the Neuroprotective Effect as a Potential Regulatory Target of Glutamate Uptake.

Authors:  Li-Nan Zhang; Yong-Jun Sun; Li-Xue Wang; Zi-Bin Gao
Journal:  Mol Neurobiol       Date:  2015-01-14       Impact factor: 5.590

6.  Specific domains in anterior pharynx-defective 1 determine its intramembrane interactions with nicastrin and presenilin.

Authors:  Po-Min Chiang; Ryan R Fortna; Donald L Price; Tong Li; Philip C Wong
Journal:  Neurobiol Aging       Date:  2010-04-10       Impact factor: 4.673

7.  Essential helix interactions in the anion transporter domain of prestin revealed by evolutionary trace analysis.

Authors:  Lavanya Rajagopalan; Nimish Patel; Srinivasan Madabushi; Julie Anne Goddard; Venkat Anjan; Feng Lin; Cindy Shope; Brenda Farrell; Olivier Lichtarge; Amy L Davidson; William E Brownell; Fred A Pereira
Journal:  J Neurosci       Date:  2006-12-06       Impact factor: 6.167

8.  Progesterone modulation of transmembrane helix-helix interactions between the alpha-subunit of Na/K-ATPase and phospholipid N-methyltransferase in the oocyte plasma membrane.

Authors:  Gene A Morrill; Adele B Kostellow; Amir Askari
Journal:  BMC Struct Biol       Date:  2010-05-25

9.  GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination.

Authors:  Jin-Gui Chen; Sona Pandey; Jirong Huang; José M Alonso; Joseph R Ecker; Sarah M Assmann; Alan M Jones
Journal:  Plant Physiol       Date:  2004-06-04       Impact factor: 8.340

10.  The odorant receptor repertoire of teleost fish.

Authors:  Tyler S Alioto; John Ngai
Journal:  BMC Genomics       Date:  2005-12-06       Impact factor: 3.969

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