Literature DB >> 10851187

Annotating eukaryote genomes.

S Lewis1, M Ashburner, M G Reese.   

Abstract

The Genome Annotation Assessment Project tested current methods of gene identification, including a critical assessment of the accuracy of different methods. Two new databases have provided new resources for gene annotation: these are the InterPro database of protein domains and motifs, and the Gene Ontology database for terms that describe the molecular functions and biological roles of gene products. Efforts in genome annotation are most often based upon advances in computer systems that are specifically designed to deal with the tremendous amounts of data being generated by current sequencing projects. These efforts in analysis are being linked to new ways of visualizing computationally annotated genomes.

Mesh:

Year:  2000        PMID: 10851187     DOI: 10.1016/s0959-440x(00)00095-6

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  25 in total

1.  An automated annotation tool for genomic DNA sequences using GeneScan and BLAST.

Authors:  A M Lynn; C K Jain; K Kosalai; P Barman; N Thakur; H Batra; A Bhattacharya
Journal:  J Genet       Date:  2001-04       Impact factor: 1.166

2.  DIAN: a novel algorithm for genome ontological classification.

Authors:  Y Pouliot; J Gao; Q J Su; G G Liu; X B Ling
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

3.  Sequence conserved for subcellular localization.

Authors:  Rajesh Nair; Burkhard Rost
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

4.  LOC3D: annotate sub-cellular localization for protein structures.

Authors:  Rajesh Nair; Burkhard Rost
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  Transcriptome analysis of Anopheles stephensi embryo using expressed sequence tags.

Authors:  Kaustubh Gokhale; Deepak P Patil; Dhiraj P Dhotre; Rajnikant Dixit; Murlidhar J Mendki; Milind S Patole; Yogesh S Shouche
Journal:  J Biosci       Date:  2013-06       Impact factor: 1.826

6.  Enhanced functional and structural domain assignments using remote similarity detection procedures for proteins encoded in the genome of Mycobacterium tuberculosis H37Rv.

Authors:  Seema Namboori; Natasha Mhatre; Sentivel Sujatha; Narayanaswamy Srinivasan; Shashi Bhushan Pandit
Journal:  J Biosci       Date:  2004-09       Impact factor: 1.826

Review 7.  Structural and functional analysis of rice genome.

Authors:  Akhilesh K Tyagi; Jitendra P Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anumapa Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma
Journal:  J Genet       Date:  2004-04       Impact factor: 1.166

8.  An insight into the transcriptome and proteome of the salivary gland of the stable fly, Stomoxys calcitrans.

Authors:  Xuyong Wang; José M C Ribeiro; Alberto B Broce; Melinda J Wilkerson; Michael R Kanost
Journal:  Insect Biochem Mol Biol       Date:  2009-07-02       Impact factor: 4.714

9.  Structure and expression of MdFBCP1, encoding an F-box-containing protein 1, during Fuji apple (Malus domestica Borkh.) fruit ripening.

Authors:  Sang Eun Han; Young Sam Seo; Seong Heo; Daeil Kim; Soon-Kee Sung; Woo Taek Kim
Journal:  Plant Cell Rep       Date:  2008-05-27       Impact factor: 4.570

10.  The sialotranscriptome of the blood-sucking bug Triatoma brasiliensis (Hemiptera, Triatominae).

Authors:  Adriana Santos; José Marcos C Ribeiro; Michael J Lehane; Nelder Figueiredo Gontijo; Artur Botelho Veloso; Mauricio R V Sant'Anna; Ricardo Nascimento Araujo; Edmundo C Grisard; Marcos Horácio Pereira
Journal:  Insect Biochem Mol Biol       Date:  2007-04-14       Impact factor: 4.714

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