Literature DB >> 10842742

SISEQ: manipulation of multiple sequence and large database files for common platforms.

N Sato1.   

Abstract

UNLABELLED: A multiple sequence file converter for common platforms, SISEQ,is described, which performs extraction of DNA sequences that correspond to CDS or RNA field of a large database file as well as subsequent multi-sequence conversions for phylogenetic or molecular biological analysis. Command-line interface as well as a GUI and a script-driven operation mode are provided. AVAILABILITY: The program is freely available to academic users in the form of Macintosh FAT binary, DOS executable, or UNIX source code at http://www.molbiol.saitama-u.ac.jp/ñaoki/ Software.html. CONTACT: naokisat@molbiol.saitama-u.ac.jp

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Year:  2000        PMID： 10842742     DOI： 10.1093/bioinformatics/16.2.180

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  13 in total

1.  DNA-binding specificity and dimerization of the DNA-binding domain of the PEND protein in the chloroplast envelope membrane.

Authors:  N Sato; N Ohta
Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

2.  Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms).

Authors:  Naoyuki Tajima; Kenji Saitoh; Shusei Sato; Fumito Maruyama; Mutsuo Ichinomiya; Shinya Yoshikawa; Ken Kurokawa; Hiroyuki Ohta; Satoshi Tabata; Akira Kuwata; Naoki Sato
Journal:  Curr Genet       Date:  2016-04-18       Impact factor: 3.886

3.  Unique translation initiation at the second AUG codon determines mitochondrial localization of the phage-type RNA polymerases in the moss Physcomitrella patens.

Authors:  Yukihiro Kabeya; Naoki Sato
Journal:  Plant Physiol       Date:  2005-04-15       Impact factor: 8.340

4.  Occurrence and characterization of PEND proteins in angiosperms.

Authors:  Kimihiro Terasawa; Naoki Sato
Journal:  J Plant Res       Date:  2005-04-16       Impact factor: 2.629

5.  Diverse origins of enzymes involved in the biosynthesis of chloroplast peptidoglycan.

Authors:  Naoki Sato; Hiroyoshi Takano
Journal:  J Plant Res       Date:  2017-04-05       Impact factor: 2.629

6.  Elucidating genome structure evolution by analysis of isoapostatic gene clusters using statistics of variance of gene distances.

Authors:  Naobumi V Sasaki; Naoki Sato
Journal:  Genome Biol Evol       Date:  2009-12-18       Impact factor: 3.416

7.  Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.

Authors:  Naoyuki Tajima; Shusei Sato; Fumito Maruyama; Ken Kurokawa; Hiroyuki Ohta; Satoshi Tabata; Kohsuke Sekine; Takashi Moriyama; Naoki Sato
Journal:  J Plant Res       Date:  2014-03-05       Impact factor: 2.629

8.  Genomic and biochemical analysis of lipid biosynthesis in the unicellular rhodophyte Cyanidioschyzon merolae: lack of a plastidic desaturation pathway results in the coupled pathway of galactolipid synthesis.

Authors:  Naoki Sato; Takashi Moriyama
Journal:  Eukaryot Cell       Date:  2007-04-06

9.  Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S.

Authors:  Naoyuki Tajima; Shusei Sato; Fumito Maruyama; Takakazu Kaneko; Naobumi V Sasaki; Ken Kurokawa; Hiroyuki Ohta; Yu Kanesaki; Hirofumi Yoshikawa; Satoshi Tabata; Masahiko Ikeuchi; Naoki Sato
Journal:  DNA Res       Date:  2011-07-29       Impact factor: 4.458

10.  Localization and phylogenetic analysis of enzymes related to organellar genome replication in the unicellular rhodophyte Cyanidioschyzon merolae.

Authors:  Takashi Moriyama; Naoyuki Tajima; Kohsuke Sekine; Naoki Sato
Journal:  Genome Biol Evol       Date:  2014-01       Impact factor: 3.416
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