Literature DB >> 10837266

Mathematical modelling of metabolism.

C Giersch1.   

Abstract

Modelling of metabolism attempts to improve our understanding of metabolic regulation by quantifying essential parts or aspects of the metabolic system. Three areas in which modelling has recently made considerable contributions toward this aim can be identified. First, the more detailed description of individual reactions and pathways; second, the analysis of relative flux limitations within a pathway by means of metabolic control analysis; and third, in vivo flux analysis using nuclear magnetic resonance or mass spectroscopic analysis in combination with positionally labelled carbon compounds.

Entities:  

Mesh:

Year:  2000        PMID: 10837266

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  12 in total

Review 1.  Metabolomics--the link between genotypes and phenotypes.

Authors:  Oliver Fiehn
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Optimal identification of biochemical reaction networks.

Authors:  Xiao-jiang Feng; Herschel Rabitz
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

3.  The Calvin cycle revisited.

Authors:  Christine A Raines
Journal:  Photosynth Res       Date:  2003       Impact factor: 3.573

4.  Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism.

Authors:  Eva Grafahrend-Belau; Falk Schreiber; Dirk Koschützki; Björn H Junker
Journal:  Plant Physiol       Date:  2008-11-05       Impact factor: 8.340

5.  Metabolic turnover analysis by a combination of in vivo 13C-labelling from 13CO2 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C3 photosynthetic pathway in Nicotiana tabacum leaves.

Authors:  Tomohisa Hasunuma; Kazuo Harada; Shin-Ichi Miyazawa; Akihiko Kondo; Eiichiro Fukusaki; Chikahiro Miyake
Journal:  J Exp Bot       Date:  2009-12-21       Impact factor: 6.992

6.  Optimizing the distribution of resources between enzymes of carbon metabolism can dramatically increase photosynthetic rate: a numerical simulation using an evolutionary algorithm.

Authors:  Xin-Guang Zhu; Eric de Sturler; Stephen P Long
Journal:  Plant Physiol       Date:  2007-08-24       Impact factor: 8.340

7.  Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale.

Authors:  Eva Grafahrend-Belau; Astrid Junker; André Eschenröder; Johannes Müller; Falk Schreiber; Björn H Junker
Journal:  Plant Physiol       Date:  2013-08-07       Impact factor: 8.340

Review 8.  Metabolic control analysis: biological applications and insights.

Authors:  M C Wildermuth
Journal:  Genome Biol       Date:  2000-12-08       Impact factor: 13.583

9.  Mathematical modeling of plant metabolism-from reconstruction to prediction.

Authors:  Thomas Nägele; Wolfram Weckwerth
Journal:  Metabolites       Date:  2012-09-06

10.  Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism.

Authors:  Hannes Doerfler; David Lyon; Thomas Nägele; Xiaoliang Sun; Lena Fragner; Franz Hadacek; Volker Egelhofer; Wolfram Weckwerth
Journal:  Metabolomics       Date:  2012-10-25       Impact factor: 4.290

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.