Literature DB >> 10811627

Crystal structure of the ribosome recycling factor from Escherichia coli.

K K Kim1, K Min, S W Suh.   

Abstract

We have determined the crystal structure of the Escherichia coli ribosome recycling factor (RRF), which catalyzes the disassembly of the termination complex in protein synthesis. The L-shaped molecule consists of two domains: a triple-stranded antiparallel coiled-coil and an alpha/beta domain. The coil domain has a cylindrical shape and negatively charged surface, which are reminiscent of the anticodon arm of tRNA and domain IV of elongation factor EF-G. We suggest that RRF binds to the ribosomal A-site through its coil domain, which is a tRNA mimic. The relative position of the two domains is changed about an axis along the hydrophobic cleft in the hinge where the alkyl chain of a detergent molecule is bound. The tRNA mimicry and the domain movement observed in RRF provide a structural basis for understanding the role of RRF in protein synthesis.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 10811627      PMCID: PMC384359          DOI: 10.1093/emboj/19.10.2362

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  44 in total

1.  Novel roles for classical factors at the interface between translation termination and initiation.

Authors:  R Karimi; M Y Pavlov; R H Buckingham; M Ehrenberg
Journal:  Mol Cell       Date:  1999-05       Impact factor: 17.970

2.  Release factor RF3 abolishes competition between release factor RF1 and ribosome recycling factor (RRF) for a ribosome binding site.

Authors:  M Y Pavlov; D V Freistroffer; V Heurgué-Hamard; R H Buckingham; M Ehrenberg
Journal:  J Mol Biol       Date:  1997-10-24       Impact factor: 5.469

3.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

4.  Crystal structure of the Ebola virus membrane fusion subunit, GP2, from the envelope glycoprotein ectodomain.

Authors:  W Weissenhorn; A Carfí; K H Lee; J J Skehel; D C Wiley
Journal:  Mol Cell       Date:  1998-11       Impact factor: 17.970

Review 5.  Ribosomal proteins and elongation factors.

Authors:  A Liljas; M Garber
Journal:  Curr Opin Struct Biol       Date:  1995-12       Impact factor: 6.809

Review 6.  Coiled coils: new structures and new functions.

Authors:  A Lupas
Journal:  Trends Biochem Sci       Date:  1996-10       Impact factor: 13.807

Review 7.  Emerging understanding of translation termination.

Authors:  Y Nakamura; K Ito; L A Isaksson
Journal:  Cell       Date:  1996-10-18       Impact factor: 41.582

8.  Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation.

Authors:  R K Agrawal; P Penczek; R A Grassucci; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

9.  Direct visualization of A-, P-, and E-site transfer RNAs in the Escherichia coli ribosome.

Authors:  R K Agrawal; P Penczek; R A Grassucci; Y Li; A Leith; K H Nierhaus; J Frank
Journal:  Science       Date:  1996-02-16       Impact factor: 47.728

10.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

View more
  27 in total

1.  Functional mapping of ribosome-contact sites in the ribosome recycling factor: a structural view from a tRNA mimic.

Authors:  T Fujiwara; K Ito; Y Nakamura
Journal:  RNA       Date:  2001-01       Impact factor: 4.942

2.  Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.

Authors:  T Toyoda; O F Tin; K Ito; T Fujiwara; T Kumasaka; M Yamamoto; M B Garber; Y Nakamura
Journal:  RNA       Date:  2000-10       Impact factor: 4.942

3.  Backbone NMR assignments of ribosome recycling factors (RRFs) from Escherichia coli and Tthermotoga maritima.

Authors:  Takuya Yoshida; Hiroyuki Kijima; Shinichiro Oka; Susumu Uchiyama; Hiroaki Nakano; Tadayasu Ohkubo; Yuji Kobayashi
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

4.  Inhibitory effect of heterologous ribosome recycling factor on growth of Escherichia coli.

Authors:  K Atarashi; A Kaji
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

5.  Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.

Authors:  Rajendra K Agrawal; Manjuli R Sharma; Michael C Kiel; Go Hirokawa; Timothy M Booth; Christian M T Spahn; Robert A Grassucci; Akira Kaji; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

6.  Structural insights into initial and intermediate steps of the ribosome-recycling process.

Authors:  Takeshi Yokoyama; Tanvir R Shaikh; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

7.  X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit.

Authors:  Daniel N Wilson; Frank Schluenzen; Joerg M Harms; Takuya Yoshida; Tadayasu Ohkubo; Renate Albrecht; Joerg Buerger; Yuji Kobayashi; Paola Fucini
Journal:  EMBO J       Date:  2004-12-23       Impact factor: 11.598

Review 8.  Mechanism of recycling of post-termination ribosomal complexes in eubacteria: a new role of initiation factor 3.

Authors:  Anuradha Seshadri; Umesh Varshney
Journal:  J Biosci       Date:  2006-06       Impact factor: 1.826

9.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

10.  Specific binding of ribosome recycling factor (RRF) with the Escherichia coli ribosomes by BIACORE.

Authors:  Roumiana T Todorova; Yukari Saihara
Journal:  Mol Biol Rep       Date:  2003-06       Impact factor: 2.316

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.