Literature DB >> 10811210

A surprising simplicity to protein folding.

D Baker1.   

Abstract

The polypeptide chains that make up proteins have thousands of atoms and hence millions of possible inter-atomic interactions. It might be supposed that the resulting complexity would make prediction of protein structure and protein-folding mechanisms nearly impossible. But the fundamental physics underlying folding may be much simpler than this complexity would lead us to expect folding rates and mechanisms appear to be largely determined by the topology of the native (folded) state, and new methods have shown great promise in predicting protein-folding mechanisms and the three-dimensional structures of proteins.

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Year:  2000        PMID: 10811210     DOI: 10.1038/35011000

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  133 in total

1.  An amino acid code for protein folding.

Authors:  J Rumbley; L Hoang; L Mayne; S W Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

Review 2.  Are denatured proteins ever random coils?

Authors:  R L Baldwin; B H Zimm
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

3.  Protein threading by learning.

Authors:  I Chang; M Cieplak; R I Dima; A Maritan; J R Banavar
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

4.  Biomimetic self-assembly of a functional asymmetrical electronic device.

Authors:  Mila Boncheva; David H Gracias; Heiko O Jacobs; George M Whitesides
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

5.  Increasing protein stability using a rational approach combining sequence homology and structural alignment: Stabilizing the WW domain.

Authors:  X Jiang; J Kowalski; J W Kelly
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

6.  Discovery of a significant, nontopological preference for antiparallel alignment of helices with parallel regions in sheets.

Authors:  Brandon M Hespenheide; Leslie A Kuhn
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

7.  A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state.

Authors:  Piotr Pokarowski; Andrzej Kolinski; Jeffrey Skolnick
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

8.  Interplay between hydrophobic cluster and loop propensity in beta-hairpin formation: a mechanistic study.

Authors:  Giorgio Colombo; Giacomo M S De Mori; Danilo Roccatano
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

Review 9.  Protein aggregation in disease: a role for folding intermediates forming specific multimeric interactions.

Authors:  Arthur Horwich
Journal:  J Clin Invest       Date:  2002-11       Impact factor: 14.808

10.  The behaviour of polyamino acids reveals an inverse side chain effect in amyloid structure formation.

Authors:  Marcus Fändrich; Christopher M Dobson
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

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