Literature DB >> 10805130

Improved photo-CIDNP methods for studying protein structure and folding.

K Maeda1, C E Lyon, J J Lopez, M Cemazar, C M Dobson, P J Hore.   

Abstract

Two new techniques offering considerable improvements in the quality of 1H photo-CIDNP spectra of proteins are demonstrated. Both focus on the problem of progressive photo-degradation of the flavin dye used to generate polarization in exposed tryptophan, tyrosine and histidine side-chains. One approach uses rapid addition and removal of protein/flavin solution between light flashes to mix the NMR sample and introduce fresh dye into the laser-irradiated region. The other involves chemical oxidation of photo-reduced flavin by the addition of hydrogen peroxide. In both cases a larger number of scans can be accumulated before the flavin is exhausted than would otherwise be possible. The techniques are demonstrated by 600 MHz CIDNP-NOESY spectroscopy of bovine holo-alpha-lactalbumin, and by real-time CIDNP observation of the refolding of bovine apo-alpha-lactalbumin following rapid dilution from a high concentration of chemical denaturant.

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Year:  2000        PMID: 10805130     DOI: 10.1023/a:1008351128089

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

1.  1H-NMR assignments and local environments of aromatic residues in bovine, human and guinea pig variants of alpha-lactalbumin.

Authors:  A T Alexandrescu; R W Broadhurst; C Wormald; C L Chyan; J Baum; C M Dobson
Journal:  Eur J Biochem       Date:  1992-12-15

Review 2.  Flavin radicals: chemistry and biochemistry.

Authors:  F Müller
Journal:  Free Radic Biol Med       Date:  1987       Impact factor: 7.376

3.  Following protein folding in real time using NMR spectroscopy.

Authors:  J Balbach; V Forge; N A van Nuland; S L Winder; P J Hore; C M Dobson
Journal:  Nat Struct Biol       Date:  1995-10

4.  Probing protein structure by solvent perturbation of NMR spectra. Photochemically induced dynamic nuclear polarization and paramagnetic perturbation techniques applied to the study of the molten globule state of alpha-lactalbumin.

Authors:  S Improta; H Molinari; A Pastore; R Consonni; L Zetta
Journal:  Eur J Biochem       Date:  1995-01-15

5.  Laser photo-CIDNP as a surface probe for proteins in solution.

Authors:  R Kaptein; K Dijkstra; K Nicolay
Journal:  Nature       Date:  1978-07-20       Impact factor: 49.962

6.  Laser photo-CIDNP detection of surface aromatic residues in dissociating bovine alpha-lactalbumin at submillimolar concentrations.

Authors:  L J Berliner; R Kaptein
Journal:  J Biol Chem       Date:  1980-04-25       Impact factor: 5.157

7.  Laser chemically induced dynamic nuclear polarization study of the reaction between photoexcited flavins and tryptophan derivatives at 360 MHz.

Authors:  E F McCord; R R Bucks; S G Boxer
Journal:  Biochemistry       Date:  1981-05-12       Impact factor: 3.162

8.  High-resolution proton and laser photochemically induced dynamic nuclear polarization NMR studies of cation binding to bovine alpha-lactalbumin.

Authors:  L J Berliner; K Koga; H Nishikawa; J E Scheffler
Journal:  Biochemistry       Date:  1987-09-08       Impact factor: 3.162

9.  Laser photochemically induced dynamic nuclear polarization proton nuclear magnetic resonance studies on three homologous calcium binding proteins: cardiac troponin-C, skeletal troponin-C, and calmodulin.

Authors:  M T Hincke; B D Sykes; C M Kay
Journal:  Biochemistry       Date:  1981-07-07       Impact factor: 3.162

10.  Nuclear magnetic resonance characterization of aromatic residues of alpha-lactalbumins. Laser photo chemically induced dynamic nuclear polarization nuclear magnetic resonance studies of surface exposure.

Authors:  L J Berliner; R Kaptein
Journal:  Biochemistry       Date:  1981-02-17       Impact factor: 3.162

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  8 in total

1.  Multiple subsets of side-chain packing in partially folded states of alpha-lactalbumins.

Authors:  K Hun Mok; Toshio Nagashima; Iain J Day; P J Hore; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-13       Impact factor: 11.205

2.  Refolding of ribonuclease A monitored by real-time photo-CIDNP NMR spectroscopy.

Authors:  Iain J Day; Kiminori Maeda; Howard J Paisley; K Hun Mok; P J Hore
Journal:  J Biomol NMR       Date:  2009-05-13       Impact factor: 2.835

Review 3.  Sensitivity enhancement in solution NMR: emerging ideas and new frontiers.

Authors:  Jung Ho Lee; Yusuke Okuno; Silvia Cavagnero
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

4.  Oxidative folding intermediates with nonnative disulfide bridges between adjacent cysteine residues.

Authors:  Masa Cemazar; Sotir Zahariev; Jakob J Lopez; Oliviero Carugo; Jonathan A Jones; P J Hore; Sandor Pongor
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-30       Impact factor: 11.205

5.  A novel tri-enzyme system in combination with laser-driven NMR enables efficient nuclear polarization of biomolecules in solution.

Authors:  Jung Ho Lee; Silvia Cavagnero
Journal:  J Phys Chem B       Date:  2013-04-30       Impact factor: 2.991

6.  An NMR method for studying the kinetics of metal exchange in biomolecular systems.

Authors:  Renato Barbieri; P J Hore; Claudio Luchina; Roberta Pierattelli
Journal:  J Biomol NMR       Date:  2002-08       Impact factor: 2.835

7.  Pushing nuclear magnetic resonance sensitivity limits with microfluidics and photo-chemically induced dynamic nuclear polarization.

Authors:  Miguel Mompeán; Rosa M Sánchez-Donoso; Antonio de la Hoz; Vittorio Saggiomo; Aldrik H Velders; M Victoria Gomez
Journal:  Nat Commun       Date:  2018-01-09       Impact factor: 14.919

8.  Magnetic field effect in natural cryptochrome explored with model compound.

Authors:  Shubhajit Paul; Alexey S Kiryutin; Jinping Guo; Konstantin L Ivanov; Jörg Matysik; Alexandra V Yurkovskaya; Xiaojie Wang
Journal:  Sci Rep       Date:  2017-09-19       Impact factor: 4.379

  8 in total

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