Literature DB >> 10801483

Nonsequence-specific DNA recognition: a structural perspective.

F V Murphy1, M E Churchill.   

Abstract

Chromosomal proteins that form essential architectural components of chromatin bind and bend DNA with an intrinsic low degree of sequence preference. Comparisons made between two recently determined structures of high mobility group (HMG) protein-DNA complexes and other nonsequence-specific protein-DNA complexes reveal the structural basis of this important mode of DNA binding.

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Year:  2000        PMID： 10801483     DOI： 10.1016/s0969-2126(00)00126-x

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  27 in total

1.  HMG-D complexed to a bulge DNA: an NMR model.

Authors:  R Cerdan; D Payet; J C Yang; A A Travers; D Neuhaus
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

2.  The DNA architectural protein HMGB1 displays two distinct modes of action that promote enhanceosome assembly.

Authors:  Katherine Mitsouras; Ben Wong; Charina Arayata; Reid C Johnson; Michael Carey
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

3.  The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity.

Authors:  Janet Klass; Frank V Murphy; Susan Fouts; Melissa Serenil; Anita Changela; Jessica Siple; Mair E A Churchill
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

4.  Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers.

Authors:  Attila Reményi; Katharina Lins; L Johan Nissen; Rolland Reinbold; Hans R Schöler; Matthias Wilmanns
Journal:  Genes Dev       Date:  2003-08-15       Impact factor: 11.361

5.  Structure of the bacteriophage T4 DNA adenine methyltransferase.

Authors:  Zhe Yang; John R Horton; Lan Zhou; Xu Jia Zhang; Aiping Dong; Xing Zhang; Samuel L Schlagman; Valeri Kossykh; Stanley Hattman; Xiaodong Cheng
Journal:  Nat Struct Biol       Date:  2003-08-24

6.  The HU-DNA binding interaction probed with UV resonance Raman spectroscopy: structural elements of specificity.

Authors:  Kristi Wojtuszewski; Ishita Mukerji
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

7.  Holliday junction-binding peptides inhibit distinct junction-processing enzymes.

Authors:  Kevin V Kepple; Jeffrey L Boldt; Anca M Segall
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-02       Impact factor: 11.205

8.  Temperature dependence and thermodynamics of Klenow polymerase binding to primed-template DNA.

Authors:  Kausiki Datta; Andy J Wowor; Allison J Richard; Vince J LiCata
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

9.  Purification, crystallization and preliminary X-ray diffraction analysis of the HMG domain of Sox17 in complex with DNA.

Authors:  Calista Keow Leng Ng; Paaventhan Palasingam; Rajakannan Venkatachalam; Nithya Baburajendran; Jason Cheng; Ralf Jauch; Prasanna R Kolatkar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-11-28

Review 10.  The high mobility group box: the ultimate utility player of a cell.

Authors:  Christopher S Malarkey; Mair E A Churchill
Journal:  Trends Biochem Sci       Date:  2012-11-13       Impact factor: 13.807
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