Literature DB >> 10798498

A population density approach that facilitates large-scale modeling of neural networks: analysis and an application to orientation tuning.

D Q Nykamp1, D Tranchina.   

Abstract

We explore a computationally efficient method of simulating realistic networks of neurons introduced by Knight, Manin, and Sirovich (1996) in which integrate-and-fire neurons are grouped into large populations of similar neurons. For each population, we form a probability density that represents the distribution of neurons over all possible states. The populations are coupled via stochastic synapses in which the conductance of a neuron is modulated according to the firing rates of its presynaptic populations. The evolution equation for each of these probability densities is a partial differential-integral equation, which we solve numerically. Results obtained for several example networks are tested against conventional computations for groups of individual neurons. We apply this approach to modeling orientation tuning in the visual cortex. Our population density model is based on the recurrent feedback model of a hypercolumn in cat visual cortex of Somers et al. (1995). We simulate the response to oriented flashed bars. As in the Somers model, a weak orientation bias provided by feed-forward lateral geniculate input is transformed by intracortical circuitry into sharper orientation tuning that is independent of stimulus contrast. The population density approach appears to be a viable method for simulating large neural networks. Its computational efficiency overcomes some of the restrictions imposed by computation time in individual neuron simulations, allowing one to build more complex networks and to explore parameter space more easily. The method produces smooth rate functions with one pass of the stimulus and does not require signal averaging. At the same time, this model captures the dynamics of single-neuron activity that are missed in simple firing-rate models.

Mesh:

Year:  2000        PMID: 10798498     DOI: 10.1023/a:1008912914816

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  22 in total

1.  Population dynamics of spiking neurons: fast transients, asynchronous states, and locking.

Authors:  W Gerstner
Journal:  Neural Comput       Date:  2000-01       Impact factor: 2.026

2.  Statistical model of the hippocampal CA3 region II. The population framework: model of rhythmic activity in the CA3 slice.

Authors:  G Barna; T Gróbler; P Erdi
Journal:  Biol Cybern       Date:  1998-10       Impact factor: 2.086

3.  Chaos and synchrony in a model of a hypercolumn in visual cortex.

Authors:  D Hansel; H Sompolinsky
Journal:  J Comput Neurosci       Date:  1996-03       Impact factor: 1.621

4.  Excitatory and inhibitory interactions in localized populations of model neurons.

Authors:  H R Wilson; J D Cowan
Journal:  Biophys J       Date:  1972-01       Impact factor: 4.033

5.  A mathematical theory of the functional dynamics of cortical and thalamic nervous tissue.

Authors:  H R Wilson; J D Cowan
Journal:  Kybernetik       Date:  1973-09

6.  Theory of orientation tuning in visual cortex.

Authors:  R Ben-Yishai; R L Bar-Or; H Sompolinsky
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-25       Impact factor: 11.205

7.  A model for feature linking via collective oscillations in the primary visual cortex.

Authors:  T Chawanya; T Aoyagi; I Nishikawa; K Okuda; Y Kuramoto
Journal:  Biol Cybern       Date:  1993       Impact factor: 2.086

Review 8.  Baclofen reduces post-synaptic potentials of rat cortical neurones by an action other than its hyperpolarizing action.

Authors:  J R Howe; B Sutor; W Zieglgänsberger
Journal:  J Physiol       Date:  1987-03       Impact factor: 5.182

9.  The relationship between the firing rate of a single neuron and the level of activity in a population of neurons. Experimental evidence for resonant enhancement in the population response.

Authors:  B W Knight
Journal:  J Gen Physiol       Date:  1972-06       Impact factor: 4.086

10.  Dynamics of encoding in a population of neurons.

Authors:  B W Knight
Journal:  J Gen Physiol       Date:  1972-06       Impact factor: 4.086

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  52 in total

1.  A neuronal network model of macaque primary visual cortex (V1): orientation selectivity and dynamics in the input layer 4Calpha.

Authors:  D McLaughlin; R Shapley; M Shelley; D J Wielaard
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

2.  The transient precision of integrate and fire neurons: effect of background activity and noise.

Authors:  M C Van Rossum
Journal:  J Comput Neurosci       Date:  2001 May-Jun       Impact factor: 1.621

3.  Coarse-grained reduction and analysis of a network model of cortical response: I. Drifting grating stimuli.

Authors:  Michael Shelley; David McLaughlin
Journal:  J Comput Neurosci       Date:  2002 Mar-Apr       Impact factor: 1.621

4.  How spike generation mechanisms determine the neuronal response to fluctuating inputs.

Authors:  Nicolas Fourcaud-Trocmé; David Hansel; Carl van Vreeswijk; Nicolas Brunel
Journal:  J Neurosci       Date:  2003-12-17       Impact factor: 6.167

5.  An effective kinetic representation of fluctuation-driven neuronal networks with application to simple and complex cells in visual cortex.

Authors:  David Cai; Louis Tao; Michael Shelley; David W McLaughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-06       Impact factor: 11.205

6.  The influence of spike rate and stimulus duration on noradrenergic neurons.

Authors:  Eric Brown; Jeff Moehlis; Philip Holmes; Ed Clayton; Janusz Rajkowski; Gary Aston-Jones
Journal:  J Comput Neurosci       Date:  2004 Jul-Aug       Impact factor: 1.621

7.  An embedded network approach for scale-up of fluctuation-driven systems with preservation of spike information.

Authors:  David Cai; Louis Tao; David W McLaughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-20       Impact factor: 11.205

8.  The faithful copy neuron.

Authors:  Lawrence Sirovich
Journal:  J Comput Neurosci       Date:  2012-01-11       Impact factor: 1.621

9.  Population density models of integrate-and-fire neurons with jumps: well-posedness.

Authors:  Grégory Dumont; Jacques Henry
Journal:  J Math Biol       Date:  2012-06-20       Impact factor: 2.259

10.  Feedback inhibition and throughput properties of an integrate-and-fire-or-burst network model of retinogeniculate transmission.

Authors:  Marco A Huertas; Jeffrey R Groff; Gregory D Smith
Journal:  J Comput Neurosci       Date:  2005-10       Impact factor: 1.621

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