Literature DB >> 10790417

Quantitative trait loci: a meta-analysis.

B Goffinet1, S Gerber.   

Abstract

This article presents a method to combine QTL results from different independent analyses. This method provides a modified Akaike criterion that can be used to decide how many QTL are actually represented by the QTL detected in different experiments. This criterion is computed to choose between models with one, two, three, etc., QTL. Simulations are carried out to investigate the quality of the model obtained with this method in various situations. It appears that the method allows the length of the confidence interval of QTL location to be consistently reduced when there are only very few "actual" QTL locations. An application of the method is given using data from the maize database available online at http://www. agron.missouri.edu/.

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Mesh:

Year:  2000        PMID: 10790417      PMCID: PMC1461053     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  14 in total

1.  Convergent domestication of cereal crops by independent mutations at corresponding genetic Loci.

Authors:  A H Paterson; Y R Lin; Z Li; K F Schertz; J F Doebley; S R Pinson; S C Liu; J W Stansel; J E Irvine
Journal:  Science       Date:  1995-09-22       Impact factor: 47.728

2.  A meta-analysis of adaptive deme formation in phytophagous insect populations.

Authors:  P A Zandt; S Mopper
Journal:  Am Nat       Date:  1998-10       Impact factor: 3.926

3.  Test of candidate gene--quantitative trait locus association applied to fatness in mice.

Authors:  P D Keightley; K H Morris; A Ishikawa; V M Falconer; F Oliver
Journal:  Heredity (Edinb)       Date:  1998-12       Impact factor: 3.821

4.  Meta-analysis of linkage data under worst-case conditions: a demonstration using the human OB region.

Authors:  D B Allison; M Heo
Journal:  Genetics       Date:  1998-02       Impact factor: 4.562

Review 5.  QTL analysis in plants; where are we now?

Authors:  M J Kearsey; A G Farquhar
Journal:  Heredity (Edinb)       Date:  1998-02       Impact factor: 3.821

6.  Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms.

Authors:  A H Paterson; E S Lander; J D Hewitt; S Peterson; S E Lincoln; S D Tanksley
Journal:  Nature       Date:  1988-10-20       Impact factor: 49.962

7.  Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results.

Authors:  E Lander; L Kruglyak
Journal:  Nat Genet       Date:  1995-11       Impact factor: 38.330

8.  Mapping quantitative trait loci in crosses between outbred lines using least squares.

Authors:  C S Haley; S A Knott; J M Elsen
Journal:  Genetics       Date:  1994-03       Impact factor: 4.562

9.  The association of flowering time quantitative trait loci with duplicated regions and candidate loci in Brassica oleracea.

Authors:  E J Bohuon; L D Ramsay; J A Craft; A E Arthur; D F Marshall; D J Lydiate; M J Kearsey
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

10.  Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization.

Authors:  S P Kowalski; T H Lan; K A Feldmann; A H Paterson
Journal:  Genetics       Date:  1994-10       Impact factor: 4.562

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  137 in total

1.  Statistical methods for QTL mapping in cereals.

Authors:  Christine A Hackett
Journal:  Plant Mol Biol       Date:  2002 Mar-Apr       Impact factor: 4.076

2.  Identification of a major QTL for silique length and seed weight in oilseed rape (Brassica napus L.).

Authors:  Pu Yang; Chang Shu; Lin Chen; Jinsong Xu; Jiangsheng Wu; Kede Liu
Journal:  Theor Appl Genet       Date:  2012-03-11       Impact factor: 5.699

Review 3.  Multiparent intercross populations in analysis of quantitative traits.

Authors:  Sujay Rakshit; Arunita Rakshit; J V Patil
Journal:  J Genet       Date:  2012       Impact factor: 1.166

4.  Genomic associations for drought tolerance on the short arm of wheat chromosome 4B.

Authors:  Suhas Kadam; Kalpana Singh; Sanyukta Shukla; Sonia Goel; Prashant Vikram; Vasantrao Pawar; Kishor Gaikwad; Renu Khanna-Chopra; Nagendra Singh
Journal:  Funct Integr Genomics       Date:  2012-04-05       Impact factor: 3.410

5.  Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat.

Authors:  J Le Gouis; J Bordes; C Ravel; E Heumez; S Faure; S Praud; N Galic; C Remoué; F Balfourier; V Allard; M Rousset
Journal:  Theor Appl Genet       Date:  2011-11-08       Impact factor: 5.699

6.  Multi-environment mapping and meta-analysis of 100-seed weight in soybean.

Authors:  Ya-Nan Sun; Jun-Bo Pan; Xiang-Lin Shi; Xiang-Yu Du; Qiong Wu; Zhao-Ming Qi; Hong-Wei Jiang; Da-Wei Xin; Chun-Yan Liu; Guo-Hua Hu; Qing-Shan Chen
Journal:  Mol Biol Rep       Date:  2012-06-28       Impact factor: 2.316

7.  Genetic and correlation analysis of silique-traits in Brassica napus L. by quantitative trait locus mapping.

Authors:  Liwu Zhang; Guangsheng Yang; Pingwu Liu; Dengfeng Hong; Shipeng Li; Qingbiao He
Journal:  Theor Appl Genet       Date:  2010-08-05       Impact factor: 5.699

8.  Integrating CNVs into meta-QTL identified GBP4 as positional candidate for adult cattle stature.

Authors:  Xiu-Kai Cao; Yong-Zhen Huang; Yi-Lei Ma; Jie Cheng; Zhen-Xian Qu; Yun Ma; Yue-Yu Bai; Feng Tian; Feng-Peng Lin; Yu-Lin Ma; Hong Chen
Journal:  Funct Integr Genomics       Date:  2018-05-08       Impact factor: 3.410

9.  Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome.

Authors:  Fabien Chardon; Bérangère Virlon; Laurence Moreau; Matthieu Falque; Johann Joets; Laurent Decousset; Alain Murigneux; Alain Charcosset
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

10.  Genetic variation for N-remobilization and postsilking N-uptake in a set of maize recombinant inbred lines. 3. QTL detection and coincidences.

Authors:  M Coque; A Martin; J B Veyrieras; B Hirel; A Gallais
Journal:  Theor Appl Genet       Date:  2008-06-20       Impact factor: 5.699

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