Literature DB >> 10781048

Analysis of a complete homeobox gene repertoire: implications for the evolution of diversity.

C Kappen1.   

Abstract

The completion of sequencing projects for various organisms has already advanced our insight into the evolution of entire genomes and the role of gene duplications. One multigene family that has served as a paradigm for the study of gene duplications and molecular evolution is the family of homeodomain-encoding genes. I present here an analysis of the homeodomain repertoire of an entire genome, that of the nematode Caenorhabditis elegans, in relation to our current knowledge of these genes in plants, arthropods, and mammals. A methodological framework is developed that proposes approaches for the analysis of homeodomain repertoires and multigene families in general.

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Year:  2000        PMID： 10781048      PMCID： PMC18260          DOI： 10.1073/pnas.97.9.4481

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  25 in total

1.  The homeodomain: an ancient evolutionary motif in animals and plants.

Authors:  C Kappen
Journal:  Comput Chem       Date:  2000-01

2.  Pattern generation in molecular evolution: exploitation of the variation in RNA landscapes.

Authors:  M A Huynen; P Hogeweg
Journal:  J Mol Evol       Date:  1994-07       Impact factor: 2.395

3.  Gene transpositions in the HoxD complex reveal a hierarchy of regulatory controls.

Authors:  F van der Hoeven; J Zákány; D Duboule
Journal:  Cell       Date:  1996-06-28       Impact factor: 41.582

4.  A computer model of evolutionary optimization.

Authors:  W Fontana; P Schuster
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

5.  On the PAM matrix model of protein evolution.

Authors:  W J Wilbur
Journal:  Mol Biol Evol       Date:  1985-09       Impact factor: 16.240

Review 6.  Evolution of Hox genes.

Authors:  F H Ruddle; J L Bartels; K L Bentley; C Kappen; M T Murtha; J W Pendleton
Journal:  Annu Rev Genet       Date:  1994       Impact factor: 16.830

7.  A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1.

Authors:  H Marshall; M Studer; H Pöpperl; S Aparicio; A Kuroiwa; S Brenner; R Krumlauf
Journal:  Nature       Date:  1994-08-18       Impact factor: 49.962

8.  Early evolutionary origin of major homeodomain sequence classes.

Authors:  C Kappen; K Schughart; F H Ruddle
Journal:  Genomics       Date:  1993-10       Impact factor: 5.736

9.  Breaking colinearity in the mouse HoxD complex.

Authors:  T Kondo; D Duboule
Journal:  Cell       Date:  1999-04-30       Impact factor: 41.582

Review 10.  Evolution of a regulatory gene family: HOM/HOX genes.

Authors:  C Kappen; F H Ruddle
Journal:  Curr Opin Genet Dev       Date:  1993-12       Impact factor: 5.578
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  10 in total

1.  Introduction. The evolution of evo-devo biology.

Authors:  C S Goodman; B C Coughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

2.  Molecular evolution of the homeodomain family of transcription factors.

Authors:  S Banerjee-Basu; A D Baxevanis
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

3.  Wanda: a database of duplicated fish genes.

Authors:  Yves Van de Peer; John S Taylor; Jayabalan Joseph; Axel Meyer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 4.  The shoot apical meristem: the dynamics of a stable structure.

Authors:  Jan Traas; Teva Vernoux
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-06-29       Impact factor: 6.237

5.  Evolutionary change of the numbers of homeobox genes in bilateral animals.

Authors:  Jongmin Nam; Masatoshi Nei
Journal:  Mol Biol Evol       Date:  2005-08-03       Impact factor: 16.240

6.  The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis.

Authors:  S P Venglat; T Dumonceaux; K Rozwadowski; L Parnell; V Babic; W Keller; R Martienssen; G Selvaraj; R Datla
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-26       Impact factor: 11.205

7.  KNAT2: evidence for a link between knotted-like genes and carpel development.

Authors:  V Pautot; J Dockx; O Hamant; J Kronenberger; O Grandjean; D Jublot; J Traas
Journal:  Plant Cell       Date:  2001-08       Impact factor: 11.277

8.  In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis.

Authors:  Reena Narsai; Simon R Law; Chris Carrie; Lin Xu; James Whelan
Journal:  Plant Physiol       Date:  2011-09-09       Impact factor: 8.340

9.  Diversity, phylogeny and expression patterns of Pou and Six homeodomain transcription factors in hydrozoan jellyfish Craspedacusta sowerbyi.

Authors:  Miluse Hroudova; Petr Vojta; Hynek Strnad; Zdenek Krejcik; Jakub Ridl; Jan Paces; Cestmir Vlcek; Vaclav Paces
Journal:  PLoS One       Date:  2012-04-30       Impact factor: 3.240

10.  The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis.

Authors:  Joseph F Ryan; Patrick M Burton; Maureen E Mazza; Grace K Kwong; James C Mullikin; John R Finnerty
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583
  10 in total

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