Literature DB >> 10747072

Two classes of genes in plants.

N Carels1, G Bernardi.   

Abstract

Two classes of genes were identified in three Gramineae (maize, rice, barley) and six dicots (Arabidopsis, soybean, pea, tobacco, tomato, potato). One class, the GC-rich class, contained genes with no, or few, short introns. In contrast, the GC-poor class contained genes with numerous, long introns. The similarity of the properties of each class, as present in the genomes of maize and Arabidopsis, is particularly remarkable in view of the fact that these plants exhibit large differences in genome size, average intron size, and DNA base composition. The functional relevance of the two classes of genes is stressed by (1) the conservation in homologous genes from maize and Arabidopsis not only of the number of introns and of their positions, but also of the relative size of concatenated introns; and (2) the existence of two similar classes of genes in vertebrates; interestingly, the differences in intron sizes and numbers in genes from the GC-poor and GC-rich classes are much more striking in plants than in vertebrates.

Entities:  

Mesh:

Year:  2000        PMID: 10747072      PMCID: PMC1461008     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  16 in total

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Authors: 
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5.  The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants.

Authors:  G Matassi; L M Montero; J Salinas; G Bernardi
Journal:  Nucleic Acids Res       Date:  1989-07-11       Impact factor: 16.971

6.  The gene distribution of the maize genome.

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Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

7.  ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

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8.  Compositional patterns in the nuclear genome of cold-blooded vertebrates.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

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10.  Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants.

Authors:  A Barakat; G Matassi; G Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

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  80 in total

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Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

Review 9.  Molecular markers from the transcribed/expressed region of the genome in higher plants.

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Journal:  Funct Integr Genomics       Date:  2004-04-17       Impact factor: 3.410

10.  Isochore structures in the genome of the plant Arabidopsis thaliana.

Authors:  Ren Zhang; Chun-Ting Zhang
Journal:  J Mol Evol       Date:  2004-08       Impact factor: 2.395

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