Literature DB >> 10747068

A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution.

K Naruse1, S Fukamachi, H Mitani, M Kondo, T Matsuoka, S Kondo, N Hanamura, Y Morita, K Hasegawa, R Nishigaki, A Shimada, H Wada, T Kusakabe, N Suzuki, M Kinoshita, A Kanamori, T Terado, H Kimura, M Nonaka, A Shima.   

Abstract

We mapped 633 markers (488 AFLPs, 28 RAPDs, 34 IRSs, 75 ESTs, 4 STSs, and 4 phenotypic markers) for the Medaka Oryzias latipes, a teleost fish of the order Beloniformes. Linkage was determined using a reference typing DNA panel from 39 cell lines derived from backcross progeny. This panel provided unlimited DNA for the accumulation of mapping data. The total map length of Medaka was 1354.5 cM and 24 linkage groups were detected, corresponding to the haploid chromosome number of the organism. Thirteen to 49 markers for each linkage group were obtained. Conserved synteny between Medaka and zebrafish was observed for 2 independent linkage groups. Unlike zebrafish, however, the Medaka linkage map showed obvious restriction of recombination on the linkage group containing the male-determining region (Y) locus compared to the autosomal chromosomes.

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Year:  2000        PMID： 10747068      PMCID： PMC1461045     

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  24 in total

1.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

2.  Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.

Authors:  E S Lander; D Botstein
Journal:  Genetics       Date:  1989-01       Impact factor: 4.562

3.  A highly repetitive interspersed sequence isolated from genomic DNA of the Medaka, Oryzias latipes, is conserved in three other related species within the genus Oryzias.

Authors:  K Naruse; H Mitani; A Shima
Journal:  J Exp Zool       Date:  1992-04-15

4.  Expression, linkage, and polymorphism of MHC-related genes in rainbow trout, Oncorhynchus mykiss.

Authors:  J D Hansen; P Strassburger; G H Thorgaard; W P Young; L Du Pasquier
Journal:  J Immunol       Date:  1999-07-15       Impact factor: 5.422

5.  Mermaid: a family of short interspersed repetitive elements widespread in vertebrates.

Authors:  N Shimoda; M Chevrette; M Ekker; Y Kikuchi; Y Hotta; H Okamoto
Journal:  Biochem Biophys Res Commun       Date:  1996-03-07       Impact factor: 3.575

6.  A comprehensive genetic map of the mouse genome.

Authors:  W F Dietrich; J Miller; R Steen; M A Merchant; D Damron-Boles; Z Husain; R Dredge; M J Daly; K A Ingalls; T J O'Connor
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

7.  A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Authors:  C Dib; S Fauré; C Fizames; D Samson; N Drouot; A Vignal; P Millasseau; S Marc; J Hazan; E Seboun; M Lathrop; G Gyapay; J Morissette; J Weissenbach
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

8.  A detailed linkage map of rainbow trout produced using doubled haploids.

Authors:  W P Young; P A Wheeler; V H Coryell; P Keim; G H Thorgaard
Journal:  Genetics       Date:  1998-02       Impact factor: 4.562

9.  Molecular cloning and linkage analysis of the Japanese medaka fish complement Bf/C2 gene.

Authors:  N Kuroda; H Wada; K Naruse; A Simada; A Shima; M Sasaki; M Nonaka
Journal:  Immunogenetics       Date:  1996       Impact factor: 2.846

10.  Linkage relationships of gene loci in the Medaka, Oryzias latipes (Pisces: Oryziatidae), determined by backcrosses and gynogenesis.

Authors:  K Naruse; A Shima
Journal:  Biochem Genet       Date:  1989-04       Impact factor: 1.890
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  87 in total

1.  Phylogenetic analysis of T-Box genes demonstrates the importance of amphioxus for understanding evolution of the vertebrate genome.

Authors:  I Ruvinsky; L M Silver; J J Gibson-Brown
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

2.  Wanda: a database of duplicated fish genes.

Authors:  Yves Van de Peer; John S Taylor; Jayabalan Joseph; Axel Meyer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Gene mapping in fishes: a means to an end.

Authors:  R G Danzmann; K Gharbi
Journal:  Genetica       Date:  2001       Impact factor: 1.082

4.  Conserved vertebrate chromosome segments in the large salamander genome.

Authors:  S R Voss; J J Smith; D M Gardiner; D M Parichy
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

5.  Mapping unexplored genomes: a genetic linkage map of the Hawaiian cricket Laupala.

Authors:  Y M Parsons; K L Shaw
Journal:  Genetics       Date:  2002-11       Impact factor: 4.562

6.  Physical and genetic mapping of the rainbow trout major histocompatibility regions: evidence for duplication of the class I region.

Authors:  Ruth B Phillips; Ana Zimmerman; Marc A Noakes; Yniv Palti; Matt R W Morasch; Lisa Eiben; Sandra S Ristow; Gary H Thorgaard; John D Hansen
Journal:  Immunogenetics       Date:  2003-10-18       Impact factor: 2.846

7.  Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution.

Authors:  Chi-Hua Chiu; Ken Dewar; Günter P Wagner; Kazuhiko Takahashi; Frank Ruddle; Christina Ledje; Peter Bartsch; Jean-Luc Scemama; Edmund Stellwag; Claudia Fried; Sonja J Prohaska; Peter F Stadler; Chris T Amemiya
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

8.  Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish.

Authors:  Angel Amores; Tohru Suzuki; Yi-Lin Yan; Jordan Pomeroy; Amy Singer; Chris Amemiya; John H Postlethwait
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

Review 9.  The birds and the bees and the flowers and the trees: lessons from genetic mapping of sex determination in plants and animals.

Authors:  Deborah Charlesworth; Judith E Mank
Journal:  Genetics       Date:  2010-09       Impact factor: 4.562

10.  Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish.

Authors:  Simone Hoegg; Henner Brinkmann; John S Taylor; Axel Meyer
Journal:  J Mol Evol       Date:  2004-08       Impact factor: 2.395
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