Literature DB >> 10745103

The application of shannon entropy in the identification of putative drug targets.

S Fuhrman1, M J Cunningham, X Wen, G Zweiger, J J Seilhamer, R Somogyi.   

Abstract

A major challenge in the field of functional genomics is the development of computational techniques for organizing and interpreting large amounts of gene expression data. These methods will be critical for the discovery of new therapeutic drug targets. Here, we present a simple method for determining the most likely drug target candidates from temporal gene expression patterns assayed with reverse-transcription polymerase chain reaction (RT-PCR) and DNA microarrays.

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Year:  2000        PMID: 10745103     DOI: 10.1016/s0303-2647(99)00077-5

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  17 in total

1.  Region-specific transcriptional response to chronic nicotine in rat brain.

Authors:  J K Kane; T Barrett; M P Vawter; R Chang; J Z Ma; D M Donovan; B Sharp; K G Becker; M D Li
Journal:  Brain Res       Date:  2001-08-03       Impact factor: 3.252

2.  Spearman correlation identifies statistically significant gene expression clusters in spinal cord development and injury.

Authors:  Max Kotlyar; Stefanie Fuhrman; Alan Ableson; Roland Somogyi
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

Review 3.  DNA methylation-based variation between human populations.

Authors:  Farzeen Kader; Meenu Ghai
Journal:  Mol Genet Genomics       Date:  2016-11-04       Impact factor: 3.291

4.  Using weighted entropy to rank chemicals in quantitative high-throughput screening experiments.

Authors:  Keith R Shockley
Journal:  J Biomol Screen       Date:  2013-09-20

5.  Application of a translational profiling approach for the comparative analysis of CNS cell types.

Authors:  Joseph P Doyle; Joseph D Dougherty; Myriam Heiman; Eric F Schmidt; Tanya R Stevens; Guojun Ma; Sujata Bupp; Prerana Shrestha; Rajiv D Shah; Martin L Doughty; Shiaoching Gong; Paul Greengard; Nathaniel Heintz
Journal:  Cell       Date:  2008-11-14       Impact factor: 41.582

6.  Analysis of metagene portraits reveals distinct transitions during kidney organogenesis.

Authors:  Igor F Tsigelny; Valentina L Kouznetsova; Derina E Sweeney; Wei Wu; Kevin T Bush; Sanjay K Nigam
Journal:  Sci Signal       Date:  2008-12-09       Impact factor: 8.192

7.  Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis.

Authors:  Sourav Roy; Laetitia Poidevin; Tao Jiang; Howard S Judelson
Journal:  BMC Genomics       Date:  2013-02-16       Impact factor: 3.969

8.  QDMR: a quantitative method for identification of differentially methylated regions by entropy.

Authors:  Yan Zhang; Hongbo Liu; Jie Lv; Xue Xiao; Jiang Zhu; Xiaojuan Liu; Jianzhong Su; Xia Li; Qiong Wu; Fang Wang; Ying Cui
Journal:  Nucleic Acids Res       Date:  2011-02-08       Impact factor: 16.971

9.  Pathways to decoding the clinical potential of stress response FOXO-interaction networks for Huntington's disease: of gene prioritization and context dependence.

Authors:  Frédéric Parmentier; François-Xavier Lejeune; Christian Neri
Journal:  Front Aging Neurosci       Date:  2013-06-13       Impact factor: 5.750

10.  DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data.

Authors:  Daniel Glez-Peña; Rodrigo Alvarez; Fernando Díaz; Florentino Fdez-Riverola
Journal:  BMC Bioinformatics       Date:  2009-01-29       Impact factor: 3.169

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