Literature DB >> 10718196

mRNAs encoding zinc finger protein isoforms are expressed by alternative splicing of an in-frame intron in fission yeast.

K Okazaki1, O Niwa.   

Abstract

We report here that a gene encoding a protein with three zinc fingers is expressed predominantly to produce a protein containing only two zinc fingers in the fission yeast Schizosaccharomyces pombe. A third zinc finger resides within the in-frame intron that is normally spliced out. By RT-PCR analysis, we detected a minor transcript encoding a protein with three zinc fingers. Such alternative splicing for assortment of zinc finger domains have been reported in animals and implicated in switching of the target genes expressed specifically during development. This is the first report of the occurrence of such zinc finger assortment in lower eucaryotes.

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Year:  2000        PMID: 10718196     DOI: 10.1093/dnares/7.1.27

Source DB:  PubMed          Journal:  DNA Res        ISSN: 1340-2838            Impact factor:   4.458


  14 in total

1.  Alternative splicing of transcripts of the transposon Restless is maintained in the foreign host Neurospora crassa and can be modified by introducing mutations at the 5' and 3' splice sites.

Authors:  Frank Kempken; Frank Windhofer
Journal:  Curr Genet       Date:  2004-05-18       Impact factor: 3.886

2.  Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing.

Authors:  Shravan Kumar Mishra; Tim Ammon; Grzegorz M Popowicz; Marcin Krajewski; Roland J Nagel; Manuel Ares; Tad A Holak; Stefan Jentsch
Journal:  Nature       Date:  2011-05-25       Impact factor: 49.962

3.  Pre-spliceosome formation in S.pombe requires a stable complex of SF1-U2AF(59)-U2AF(23).

Authors:  Tao Huang; Josep Vilardell; Charles C Query
Journal:  EMBO J       Date:  2002-10-15       Impact factor: 11.598

4.  Exonic splicing enhancers in fission yeast: functional conservation demonstrates an early evolutionary origin.

Authors:  Christopher J Webb; Charles M Romfo; Willem J van Heeckeren; Jo Ann Wise
Journal:  Genes Dev       Date:  2004-12-29       Impact factor: 11.361

5.  Dsk1p kinase phosphorylates SR proteins and regulates their cellular localization in fission yeast.

Authors:  Zhaohua Tang; Amy Tsurumi; Sarah Alaei; Christopher Wilson; Cathleen Chiu; Jessica Oya; Benson Ngo
Journal:  Biochem J       Date:  2007-07-01       Impact factor: 3.857

6.  Interactions between two fission yeast serine/arginine-rich proteins and their modulation by phosphorylation.

Authors:  Zhaohua Tang; Norbert F Käufer; Ren-Jang Lin
Journal:  Biochem J       Date:  2002-12-01       Impact factor: 3.857

7.  Nucleotide sequence composition adjacent to intronic splice sites improves splicing efficiency via its effect on pre-mRNA local folding in fungi.

Authors:  Zohar Zafrir; Tamir Tuller
Journal:  RNA       Date:  2015-08-05       Impact factor: 4.942

8.  Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes.

Authors:  Tobias Warnecke; Joanna L Parmley; Laurence D Hurst
Journal:  Genome Biol       Date:  2008-02-07       Impact factor: 13.583

9.  Klf1, a C2H2 zinc finger-transcription factor, is required for cell wall maintenance during long-term quiescence in differentiated G0 phase.

Authors:  Mizuki Shimanuki; Lisa Uehara; Tomáš Pluskal; Tomoko Yoshida; Aya Kokubu; Yosuke Kawasaki; Mitsuhiro Yanagida
Journal:  PLoS One       Date:  2013-10-22       Impact factor: 3.240

10.  Schizophyllum commune has an extensive and functional alternative splicing repertoire.

Authors:  Thies Gehrmann; Jordi F Pelkmans; Luis G Lugones; Han A B Wösten; Thomas Abeel; Marcel J T Reinders
Journal:  Sci Rep       Date:  2016-09-23       Impact factor: 4.379

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