Literature DB >> 10716987

Extension of transverse relaxation-optimized spectroscopy techniques to allosteric proteins: CO- and paramagnetic fluoromet-hemoglobin [beta (15N-valine)].

J M Nocek1, K Huang, B M Hoffman.   

Abstract

We present the first steps in applying transverse relaxation-optimized spectroscopy (TROSY) techniques to the study of allosterism. Each beta-chain of the hemoglobin (Hb) tetramer has 17 valine residues. We have (15)N-labeled the beta-chain Val residues and detected 16 of the 17 (1)H-(15)N correlation peaks for beta-chain Val of the R state CO-Hb structure by using the TROSY technique. Sequence-specific assignments are suggested, based mainly on analysis of the (1)H pseudocontact-shift increments produced by oxidizing the diamagnetic R state HbCO to the paramagnetic R state fluoromet form. When possible, we support these assignments with sequential nuclear Overhauser effect (NOE) information obtained from a two-dimensional [(1)H,(1)H]-NOESY-TROSY experiment (NOESY, NOE spectroscopy). We have induced further the R-T conformational change by adding the allosteric effector, inositol hexaphosphate, to the fluoromet-Hb sample. This change induces substantial increments in the (1)H and (15)N chemical shifts, and we discuss the implication of these findings in the context of the tentative sequence assignments. These preliminary results suggest that amide nitrogen and amide proton chemical shifts in a selectively labeled sample are site-specific probes for monitoring the allosteric response of the ensemble-averaged solution structure of Hb. More important, the chemical-shift dispersion obtained is adequate to permit a complete assignment of the backbone (15)N/(13)C resonances upon nonselective labeling.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 10716987      PMCID: PMC15964          DOI: 10.1073/pnas.97.6.2538

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

Review 1.  Proton nuclear magnetic resonance studies on hemoglobin: cooperative interactions and partially ligated intermediates.

Authors:  C Ho
Journal:  Adv Protein Chem       Date:  1992

2.  Gradient and sensitivity enhancement of 2D TROSY with water flip-back, 3D NOESY-TROSY and TOCSY-TROSY experiments.

Authors:  G Zhu; X M Kong; K H Sze
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

Review 3.  Glycogen phosphorylase. The structural basis of the allosteric response and comparison with other allosteric proteins.

Authors:  L N Johnson; D Barford
Journal:  J Biol Chem       Date:  1990-02-15       Impact factor: 5.157

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  [13C]-constant-time [15N,1H]-TROSY-HNCA for sequential assignments of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

6.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

7.  Analysis of the 1H-NMR chemical shifts of Cu(I)-, Cu(II)- and Cd-substituted pea plastocyanin. Metal-dependent differences in the hydrogen-bond network around the copper site.

Authors:  M Ubbink; L Y Lian; S Modi; P A Evans; D S Bendall
Journal:  Eur J Biochem       Date:  1996-11-15

8.  Functional properties of human hemoglobins synthesized from recombinant mutant beta-globins.

Authors:  M L Doyle; G Lew; A De Young; L Kwiatkowski; A Wierzba; R W Noble; G K Ackers
Journal:  Biochemistry       Date:  1992-09-15       Impact factor: 3.162

9.  Human hemoglobin expression in Escherichia coli: importance of optimal codon usage.

Authors:  R A Hernan; H L Hui; M E Andracki; R W Noble; S G Sligar; J A Walder; R Y Walder
Journal:  Biochemistry       Date:  1992-09-15       Impact factor: 3.162

10.  A third quaternary structure of human hemoglobin A at 1.7-A resolution.

Authors:  M M Silva; P H Rogers; A Arnone
Journal:  J Biol Chem       Date:  1992-08-25       Impact factor: 5.157

View more
  3 in total

1.  Geometry dependent two-dimensional heteronuclear multiplet effects in paramagnetic proteins.

Authors:  P K Madhu; R Grandori; K Hohenthanner; P K Mandal; N Müller
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

2.  Angular dependence of dipole-dipole-Curie-spin cross-correlation effects in high-spin and low-spin paramagnetic myoglobin.

Authors:  Guido Pintacuda; Karin Hohenthanner; Gottfried Otting; Norbert Müller
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

3.  1H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.

Authors:  Youlin Xia; Adelinda Yee; Cheryl H Arrowsmith; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.