Literature DB >> 10699843

Effect of hydrostatic pressure on nucleic acids.

R B Macgregor1.   

Abstract

In comparison to other biomolecules, the effect of hydrostatic pressure on the conformational stability of DNA and RNA has received scant attention. However, the increasing interest in the hydration of biological molecules has resulted in a concomitant increase in the number of investigations of the effect of pressure upon the structure of nucleic acids. In this review, studies concerning the effect of pressure on DNA and RNA oligomers and polymers are presented. The greatest amount of research has been directed at studying the effect of pressure on the stability of the double helix. In general, under most conditions, the helical form of DNA or RNA is stabilized by pressure. The extent of stabilization is small relative to the effect of pressure on other biomolecular systems such as lipid membranes or protein quaternary structure. The absence of a larger pressure effect arises, in part because the state of ionization does not change as a function of the helical state. Initial experiments have also appeared on the effect of pressure upon helix-formation kinetics, B-Z and A-Z equilibria, and DNA topology. Fourier-transform ir spectroscopy of DNA polymers under high pressure has yielded data that showing that pressure does not induce large-scale structural changes. Copyright 2000 John Wiley & Sons, Inc.

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Year:  1998        PMID: 10699843     DOI: 10.1002/(sici)1097-0282(1998)48:4<253::aid-bip5>3.3.co;2-6

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  11 in total

1.  Structural and thermodynamic properties of a linearly perturbed matrix model for RNA folding.

Authors:  I Garg; N Deo
Journal:  Eur Phys J E Soft Matter       Date:  2010-11-18       Impact factor: 1.890

2.  Hydrostatic and osmotic pressure study of the RNA hydration.

Authors:  Małgorzata Giel-Pietraszuk; Jan Barciszewski
Journal:  Mol Biol Rep       Date:  2012-05       Impact factor: 2.316

3.  The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity.

Authors:  Agnieszka Fedoruk-Wyszomirska; Małgorzata Giel-Pietraszuk; Eliza Wyszko; Maciej Szymański; Jerzy Ciesiołka; Mirosława Z Barciszewska; Jan Barciszewski
Journal:  Mol Biol Rep       Date:  2008-09-23       Impact factor: 2.316

4.  Effect of high hydrostatic pressure on hydration and activity of ribozymes.

Authors:  Małgorzata Giel-Pietraszuk; Agnieszka Fedoruk-Wyszomirska; Jan Barciszewski
Journal:  Mol Biol Rep       Date:  2010-03-04       Impact factor: 2.316

5.  Validation of the nearest-neighbor model for Watson-Crick self-complementary DNA duplexes in molecular crowding condition.

Authors:  Saptarshi Ghosh; Shuntaro Takahashi; Tamaki Endoh; Hisae Tateishi-Karimata; Soumitra Hazra; Naoki Sugimoto
Journal:  Nucleic Acids Res       Date:  2019-04-23       Impact factor: 16.971

6.  Hidden intermediates in Mango III RNA aptamer folding revealed by pressure perturbation.

Authors:  Balasubramanian Harish; Jinqiu Wang; Eric J Hayden; Bastian Grabe; Wolf Hiller; Roland Winter; Catherine A Royer
Journal:  Biophys J       Date:  2021-12-28       Impact factor: 4.033

7.  Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes.

Authors:  Gregory E Sims; Sung-Hou Kim
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

8.  The catalytic mechanism of hairpin ribozyme studied by hydrostatic pressure.

Authors:  Sylvia Tobé; Thomas Heams; Jacques Vergne; Guy Hervé; Marie-Christine Maurel
Journal:  Nucleic Acids Res       Date:  2005-05-03       Impact factor: 16.971

9.  Structural change in a B-DNA helix with hydrostatic pressure.

Authors:  David J Wilton; Mahua Ghosh; K V A Chary; Kazuyuki Akasaka; Mike P Williamson
Journal:  Nucleic Acids Res       Date:  2008-05-31       Impact factor: 16.971

Review 10.  Nucleic Acid Catalysis under Potential Prebiotic Conditions.

Authors:  Kristian Le Vay; Elia Salibi; Emilie Y Song; Hannes Mutschler
Journal:  Chem Asian J       Date:  2019-12-09
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