Literature DB >> 10699842

X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution.

M Egli1, V Tereshko, M Teplova, G Minasov, A Joachimiak, R Sanishvili, C M Weeks, R Miller, M A Maier, H An, P Dan Cook, M Manoharan.   

Abstract

We have determined single crystal structures of an A-DNA decamer and a B-DNA dodecamer at 0.83 and 0.95 A, respectively. The resolution of the former is the highest reported thus far for any right-handed nucleic acid duplex and the quality of the diffraction data allowed determination of the structure with direct methods. The structures reveal unprecedented details of DNA fine structure and hydration; in particular, we have reexamined the overall hydration of A- and B-form DNA, the distribution of water around phosphate groups, and features of the water structure that may underlie the B to A transition. Copyright 2000 John Wiley & Sons, Inc.

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Year:  1998        PMID: 10699842     DOI: 10.1002/(SICI)1097-0282(1998)48:4<234::AID-BIP4>3.0.CO;2-H

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  46 in total

1.  DNA polymorphism: a comparison of force fields for nucleic acids.

Authors:  Swarnalatha Y Reddy; Fabrice Leclerc; Martin Karplus
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

2.  Accurate representation of B-DNA double helical structure with implicit solvent and counterions.

Authors:  Lihua Wang; Brian E Hingerty; A R Srinivasan; Wilma K Olson; Suse Broyde
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

3.  Hydration of ds-DNA and ss-DNA by neutron quasielastic scattering.

Authors:  M Bastos; V Castro; G Mrevlishvili; J Teixeira
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

4.  Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations.

Authors:  Surjit B Dixit; Mihaly Mezei; David L Beveridge
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

5.  Hydration changes in the association of Hoechst 33258 with DNA.

Authors:  John R Kiser; Richard W Monk; Rondey L Smalls; Jeffrey T Petty
Journal:  Biochemistry       Date:  2005-12-27       Impact factor: 3.162

Review 6.  What drives proteins into the major or minor grooves of DNA?

Authors:  Peter L Privalov; Anatoly I Dragan; Colyn Crane-Robinson; Kenneth J Breslauer; David P Remeta; Conceição A S A Minetti
Journal:  J Mol Biol       Date:  2006-09-27       Impact factor: 5.469

7.  Nucleic-acid structural deformability deduced from anisotropic displacement parameters.

Authors:  Heather E Peckham; Wilma K Olson
Journal:  Biopolymers       Date:  2010-11-29       Impact factor: 2.505

8.  A preliminary neutron crystallographic study of an A-DNA crystal.

Authors:  Ricardo M F Leal; Susana C M Teixeira; Matthew P Blakeley; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-12

9.  Cryo-neutron crystallographic data collection and preliminary refinement of left-handed Z-DNA d(CGCGCG).

Authors:  Joel M Harp; Leighton Coates; Brendan Sullivan; Martin Egli
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-09-21       Impact factor: 1.056

Review 10.  Crystallographic studies of chemically modified nucleic acids: a backward glance.

Authors:  Martin Egli; Pradeep S Pallan
Journal:  Chem Biodivers       Date:  2010-01       Impact factor: 2.408

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