Literature DB >> 10692366

Evolution of arginine biosynthesis in the bacterial domain: novel gene-enzyme relationships from psychrophilic Moritella strains (Vibrionaceae) and evolutionary significance of N-alpha-acetyl ornithinase.

Y Xu1, Z Liang, C Legrain, H J Rüger, N Glansdorff.   

Abstract

In the arginine biosynthetic pathway of the vast majority of prokaryotes, the formation of ornithine is catalyzed by an enzyme transferring the acetyl group of N-alpha-acetylornithine to glutamate (ornithine acetyltransferase [OATase]) (argJ encoded). Only two exceptions had been reported-the Enterobacteriaceae and Myxococcus xanthus (members of the gamma and delta groups of the class Proteobacteria, respectively)-in which ornithine is produced from N-alpha-acetylornithine by a deacylase, acetylornithinase (AOase) (argE encoded). We have investigated the gene-enzyme relationship in the arginine regulons of two psychrophilic Moritella strains belonging to the Vibrionaceae, a family phylogenetically related to the Enterobacteriaceae. Most of the arg genes were found to be clustered in one continuous sequence divergently transcribed in two wings, argE and argCBFGH(A) ["H(A)" indicates that the argininosuccinase gene consists of a part homologous to known argH sequences and of a 3' extension able to complement an Escherichia coli mutant deficient in the argA gene, encoding N-alpha-acetylglutamate synthetase, the first enzyme committed to the pathway]. Phylogenetic evidence suggests that this new clustering pattern arose in an ancestor common to Vibrionaceae and Enterobacteriaceae, where OATase was lost and replaced by a deacylase. The AOase and ornithine carbamoyltransferase of these psychrophilic strains both display distinctly cold-adapted activity profiles, providing the first cold-active examples of such enzymes.

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Year:  2000        PMID: 10692366      PMCID: PMC94458          DOI: 10.1128/JB.182.6.1609-1615.2000

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  45 in total

1.  Structure of the arginine repressor from Bacillus stearothermophilus.

Authors:  J Ni; V Sakanyan; D Charlier; N Glansdorff; G D Van Duyne
Journal:  Nat Struct Biol       Date:  1999-05

2.  Identification and characterization of the Myxococcus xanthus argE gene.

Authors:  B Z Harris; M Singer
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

3.  Changes in the microbial community in Japan Trench sediment from a depth of 6292 m during cultivation without decompression.

Authors:  M Yanagibayashi; Y Nogi; L Li; C Kato
Journal:  FEMS Microbiol Lett       Date:  1999-01-01       Impact factor: 2.742

4.  Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Authors:  D R Smith; L A Doucette-Stamm; C Deloughery; H Lee; J Dubois; T Aldredge; R Bashirzadeh; D Blakely; R Cook; K Gilbert; D Harrison; L Hoang; P Keagle; W Lumm; B Pothier; D Qiu; R Spadafora; R Vicaire; Y Wang; J Wierzbowski; R Gibson; N Jiwani; A Caruso; D Bush; J N Reeve
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

5.  Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.

Authors:  K E Nelson; R A Clayton; S R Gill; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; W C Nelson; K A Ketchum; L McDonald; T R Utterback; J A Malek; K D Linher; M M Garrett; A M Stewart; M D Cotton; M S Pratt; C A Phillips; D Richardson; J Heidelberg; G G Sutton; R D Fleischmann; J A Eisen; O White; S L Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Nature       Date:  1999-05-27       Impact factor: 49.962

6.  The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.

Authors:  H P Klenk; R A Clayton; J F Tomb; O White; K E Nelson; K A Ketchum; R J Dodson; M Gwinn; E K Hickey; J D Peterson; D L Richardson; A R Kerlavage; D E Graham; N C Kyrpides; R D Fleischmann; J Quackenbush; N H Lee; G G Sutton; S Gill; E F Kirkness; B A Dougherty; K McKenney; M D Adams; B Loftus; S Peterson; C I Reich; L K McNeil; J H Badger; A Glodek; L Zhou; R Overbeek; J D Gocayne; J F Weidman; L McDonald; T Utterback; M D Cotton; T Spriggs; P Artiach; B P Kaine; S M Sykes; P W Sadow; K P D'Andrea; C Bowman; C Fujii; S A Garland; T M Mason; G J Olsen; C M Fraser; H O Smith; C R Woese; J C Venter
Journal:  Nature       Date:  1997-11-27       Impact factor: 49.962

7.  Genes and enzymes of the acetyl cycle of arginine biosynthesis in the extreme thermophilic bacterium Thermus thermophilus HB27.

Authors:  M Baetens; C Legrain; A Boyen; N Glansdorff
Journal:  Microbiology (Reading)       Date:  1998-02       Impact factor: 2.777

8.  The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.

Authors:  G Deckert; P V Warren; T Gaasterland; W G Young; A L Lenox; D E Graham; R Overbeek; M A Snead; M Keller; M Aujay; R Huber; R A Feldman; J M Short; G J Olsen; R V Swanson
Journal:  Nature       Date:  1998-03-26       Impact factor: 49.962

9.  The crystal structure of Pyrococcus furiosus ornithine carbamoyltransferase reveals a key role for oligomerization in enzyme stability at extremely high temperatures.

Authors:  V Villeret; B Clantin; C Tricot; C Legrain; M Roovers; V Stalon; N Glansdorff; J Van Beeumen
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

10.  Aspartate carbamoyltransferase from a psychrophilic deep-sea bacterium, Vibrio strain 2693: properties of the enzyme, genetic organization and synthesis in Escherichia coli.

Authors:  Y Xu; Y Zhang; Z Liang; M Van de Casteele; C Legrain; N Glansdorff
Journal:  Microbiology       Date:  1998-05       Impact factor: 2.777

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  16 in total

1.  Functional characterization of a novel ArgA from Mycobacterium tuberculosis.

Authors:  James C Errey; John S Blanchard
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

2.  Structural characterization of Zn(II)-, Co(II)-, and Mn(II)-loaded forms of the argE-encoded N-acetyl-L-ornithine deacetylase from Escherichia coli.

Authors:  Ye Tao; Jacob E Shokes; Wade C McGregor; Robert A Scott; Richard C Holz
Journal:  J Inorg Biochem       Date:  2012-02-14       Impact factor: 4.155

3.  Purification and characterization of an arginine regulatory protein, ArgR, in Corynebacterium glutamicum.

Authors:  Sei-Hyun Yim; Samil Jung; Shun-Kyoung Lee; Choong-Il Cheon; Eunsook Song; Soo-Suk Lee; Jin Shin; Myeong-Sok Lee
Journal:  J Ind Microbiol Biotechnol       Date:  2011-05-11       Impact factor: 3.346

4.  Organization and expression of a Thermus thermophilus arginine cluster: presence of unidentified open reading frames and absence of a Shine-Dalgarno sequence.

Authors:  R Sanchez; M Roovers; N Glansdorff
Journal:  J Bacteriol       Date:  2000-10       Impact factor: 3.490

5.  Metabolic enzymes from psychrophilic bacteria: challenge of adaptation to low temperatures in ornithine carbamoyltransferase from Moritella abyssi.

Authors:  Ying Xu; Georges Feller; Charles Gerday; Nicolas Glansdorff
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

6.  Moritella cold-active dihydrofolate reductase: are there natural limits to optimization of catalytic efficiency at low temperature?

Authors:  Ying Xu; Georges Feller; Charles Gerday; Nicolas Glansdorff
Journal:  J Bacteriol       Date:  2003-09       Impact factor: 3.490

7.  Replacement of the arginine biosynthesis operon in Xanthomonadales by lateral gene transfer.

Authors:  Wanessa C Lima; Carlos F M Menck
Journal:  J Mol Evol       Date:  2008-02-28       Impact factor: 2.395

Review 8.  N-acetylglutamate and its changing role through evolution.

Authors:  Ljubica Caldovic; Mendel Tuchman
Journal:  Biochem J       Date:  2003-06-01       Impact factor: 3.857

Review 9.  Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms.

Authors:  Ying Xu; Bernard Labedan; Nicolas Glansdorff
Journal:  Microbiol Mol Biol Rev       Date:  2007-03       Impact factor: 11.056

10.  Lactobacillus rhamnosus GG modifies the metabolome of pathobionts in gnotobiotic mice.

Authors:  Jinhee Kim; Iyshwarya Balasubramanian; Sheila Bandyopadhyay; Ian Nadler; Rajbir Singh; Danielle Harlan; Amanda Bumber; Yuling He; Lee J Kerkhof; Nan Gao; Xiaoyang Su; Ronaldo P Ferraris
Journal:  BMC Microbiol       Date:  2021-06-03       Impact factor: 3.605

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