Literature DB >> 10679347

Riding the wave: structural and energetic principles of helical membrane proteins.

K G Fleming1.   

Abstract

Genome sequencing efforts have revealed that perhaps as many as 20-40% of open reading frames in complex organisms may encode proteins containing at least one helical transmembrane segment. Contrasting with this approaching tidal wave of helical membrane proteins is the fact that our understanding of the sequence-structure-function relationships for membrane proteins lags far behind that of soluble proteins. This looming reality emphasizes the tremendous biochemical and structural work that remains to be done on helical membrane proteins in order to elucidate the structural and energetic principles that specify and stabilize their folds, which define their functions. These facts are not lost on the pharmaceutical industry, where successful therapeutics and major discovery efforts are targeting membrane proteins.

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Year:  2000        PMID: 10679347     DOI: 10.1016/s0958-1669(99)00056-7

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  9 in total

1.  An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data.

Authors:  Sarel J Fleishman; Susan Harrington; Richard A Friesner; Barry Honig; Nir Ben-Tal
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

Review 2.  Interaction and conformational dynamics of membrane-spanning protein helices.

Authors:  Dieter Langosch; Isaiah T Arkin
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

3.  Conserved network properties of helical membrane protein structures and its implication for improving membrane protein homology modeling at the twilight zone.

Authors:  Jun Gao; Zhijun Li
Journal:  J Comput Aided Mol Des       Date:  2008-05-28       Impact factor: 3.686

4.  Acrylamide concentration determines the direction and magnitude of helical membrane protein gel shifts.

Authors:  Arianna Rath; Fiona Cunningham; Charles M Deber
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

5.  Developing a high-quality scoring function for membrane protein structures based on specific inter-residue interactions.

Authors:  Andrew J Heim; Zhijun Li
Journal:  J Comput Aided Mol Des       Date:  2012-03-01       Impact factor: 3.686

6.  Sequence alignment and homology threading reveals prokaryotic and eukaryotic proteins similar to lactose permease.

Authors:  Vladimir N Kasho; Irina N Smirnova; H Ronald Kaback
Journal:  J Mol Biol       Date:  2006-03-09       Impact factor: 5.469

7.  Employing Escherichia coli to functionally express, purify, and characterize a human transporter.

Authors:  Matthias Quick; Ernest M Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-19       Impact factor: 11.205

8.  A novel cytoplasmic tail motif regulates mouse corin expression on the cell surface.

Authors:  Hui Li; Yue Zhang; Lina Wang; Ningzheng Dong; Xiaofei Qi; Qingyu Wu
Journal:  Biochem Biophys Res Commun       Date:  2015-08-01       Impact factor: 3.575

9.  Development of a machine learning method to predict membrane protein-ligand binding residues using basic sequence information.

Authors:  M Xavier Suresh; M Michael Gromiha; Makiko Suwa
Journal:  Adv Bioinformatics       Date:  2015-01-31
  9 in total

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