Literature DB >> 10675926

Recreating ancestral proteins.

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Abstract

Tracing the history of molecular changes using phylogenetic methods can provide powerful insights into how and why molecules work the way they do. It is now possible to recreate inferred ancestral proteins in the laboratory and study the function of these molecules. This provides a unique opportunity to study the paths and the mechanisms of functional change during molecular evolution. What insights have already emerged from such phylogenetic studies of protein evolution and function, what are the impediments to progress and what are the prospects for the future?

Year:  2000        PMID: 10675926     DOI: 10.1016/s0169-5347(99)01778-4

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  15 in total

1.  Was "molecular opportunism" a factor in the evolution of different photosynthetic light-harvesting pigment systems?

Authors:  B R Green
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

2.  A Comprehensive Study of Molecular Evolution at the Self-Incompatibility Locus of Rosaceae.

Authors:  Jahanshah Ashkani; D J G Rees
Journal:  J Mol Evol       Date:  2015-12-29       Impact factor: 2.395

Review 3.  Deep phylogeny--how a tree can help characterize early life on Earth.

Authors:  Eric A Gaucher; James T Kratzer; Ryan N Randall
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-01       Impact factor: 10.005

4.  Evolutionary Modes in Protein Observable Space: The Case of Thioredoxins.

Authors:  Sara Del Galdo; Josephine Alba; Andrea Amadei; Marco D'Abramo
Journal:  J Mol Evol       Date:  2019-05-25       Impact factor: 2.395

5.  Ancient whale rhodopsin reconstructs dim-light vision over a major evolutionary transition: Implications for ancestral diving behavior.

Authors:  Sarah Z Dungan; Belinda S W Chang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-27       Impact factor: 12.779

6.  Reconstructing large regions of an ancestral mammalian genome in silico.

Authors:  Mathieu Blanchette; Eric D Green; Webb Miller; David Haussler
Journal:  Genome Res       Date:  2004-12       Impact factor: 9.043

7.  Emerging Frontiers in the Study of Molecular Evolution.

Authors:  David A Liberles; Belinda Chang; Kerry Geiler-Samerotte; Aaron Goldman; Jody Hey; Betül Kaçar; Michelle Meyer; William Murphy; David Posada; Andrew Storfer
Journal:  J Mol Evol       Date:  2020-04       Impact factor: 2.395

8.  Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences.

Authors:  Mark A Jensen; Fu-Sheng Li; Angélique B van 't Wout; David C Nickle; Daniel Shriner; Hong-Xia He; Sherry McLaughlin; Raj Shankarappa; Joseph B Margolick; James I Mullins
Journal:  J Virol       Date:  2003-12       Impact factor: 5.103

9.  Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes.

Authors:  Howard A Ross; David C Nickle; Yi Liu; Laura Heath; Mark A Jensen; Allen G Rodrigo; James I Mullins
Journal:  Evol Bioinform Online       Date:  2007-01-13       Impact factor: 1.625

10.  A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion.

Authors:  Daniele Catanzaro; Ramamoorthi Ravi; Russell Schwartz
Journal:  Algorithms Mol Biol       Date:  2013-01-23       Impact factor: 1.405

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