Literature DB >> 10675347

Tn10 transpososome assembly involves a folded intermediate that must be unfolded for target capture and strand transfer.

J S Sakai1, N Kleckner, X Yang, A Guhathakurta.   

Abstract

Tn10 transposition, like all transposition reactions examined thus far, involves assembly of a stable protein-DNA transpososome, containing a pair of transposon ends, within which all chemical events occur. We report here that stable Tn10 pre-cleavage transpososomes occur in two conformations: a folded form which contains the DNA-bending factor IHF and an unfolded form which lacks IHF. Functional analysis shows that both forms undergo double strand cleavage at the transposon ends but that only the unfolded form is competent for target capture (and thus for strand transfer to target DNA). Additional studies reveal that formation of any type of stable transpososome, folded or unfolded, requires not only IHF but also non-specific transposase-DNA contacts immediately internal to the IHF-binding site, implying the occurrence of a topo- logically closed loop at the transposon end. Overall, transpososome assembly must proceed via a folded intermediate which, however, must be unfolded in order for intermolecular transposition to occur. These and other results support key features of a recently proposed model for transpososome assembly and morphogenesis.

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Year:  2000        PMID: 10675347      PMCID: PMC305616          DOI: 10.1093/emboj/19.4.776

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  24 in total

1.  Tn10 transposition via a DNA hairpin intermediate.

Authors:  A K Kennedy; A Guhathakurta; N Kleckner; D B Haniford
Journal:  Cell       Date:  1998-10-02       Impact factor: 41.582

2.  A quantitative UV laser footprinting analysis of the interaction of IHF with specific binding sites: re-evaluation of the effective concentration of IHF in the cell.

Authors:  C Murtin; M Engelhorn; J Geiselmann; F Boccard
Journal:  J Mol Biol       Date:  1998-12-11       Impact factor: 5.469

3.  IHF modulation of Tn10 transposition: sensory transduction of supercoiling status via a proposed protein/DNA molecular spring.

Authors:  R Chalmers; A Guhathakurta; H Benjamin; N Kleckner
Journal:  Cell       Date:  1998-05-29       Impact factor: 41.582

4.  Analysis of higher order intermediates and synapsis in the bent-L pathway of bacteriophage lambda site-specific recombination.

Authors:  A M Segall
Journal:  J Biol Chem       Date:  1998-09-11       Impact factor: 5.157

Review 5.  Insertion sequences.

Authors:  J Mahillon; M Chandler
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

Review 6.  Site-specific recombination in plane view.

Authors:  W Yang; K Mizuuchi
Journal:  Structure       Date:  1997-11-15       Impact factor: 5.006

7.  Factors responsible for target site selection in Tn10 transposition: a role for the DDE motif in target DNA capture.

Authors:  M S Junop; D B Haniford
Journal:  EMBO J       Date:  1997-05-15       Impact factor: 11.598

8.  The interaction of E. coli IHF protein with its specific binding sites.

Authors:  C C Yang; H A Nash
Journal:  Cell       Date:  1989-06-02       Impact factor: 41.582

9.  The interaction of recombination proteins with supercoiled DNA: defining the role of supercoiling in lambda integrative recombination.

Authors:  E Richet; P Abcarian; H A Nash
Journal:  Cell       Date:  1986-09-26       Impact factor: 41.582

10.  Rapid and efficient site-specific mutagenesis without phenotypic selection.

Authors:  T A Kunkel; J D Roberts; R A Zakour
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

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  11 in total

1.  Protein-DNA contacts and conformational changes in the Tn10 transpososome during assembly and activation for cleavage.

Authors:  P Crellin; R Chalmers
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

2.  Determinants for hairpin formation in Tn10 transposition.

Authors:  J S Allingham; S J Wardle; D B Haniford
Journal:  EMBO J       Date:  2001-06-01       Impact factor: 11.598

3.  IHF-independent assembly of the Tn10 strand transfer transpososome: implications for inhibition of disintegration.

Authors:  Barry J Stewart; Simon J Wardle; David B Haniford
Journal:  EMBO J       Date:  2002-08-15       Impact factor: 11.598

4.  The left end of IS2: a compromise between transpositional activity and an essential promoter function that regulates the transposition pathway.

Authors:  Leslie A Lewis; Edruge Cylin; Ho Kyung Lee; Robert Saby; Wilson Wong; Nigel D F Grindley
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

5.  The positive and negative regulation of Tn10 transposition by IHF is mediated by structurally asymmetric transposon arms.

Authors:  Sven Sewitz; Paul Crellin; Ronald Chalmers
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

6.  DNA requirements for assembly and stability of HIV-1 intasomes.

Authors:  Min Li; Vassili Ivanov; Michiyo Mizuuchi; Kiyoshi Mizuuchi; Robert Craigie
Journal:  Protein Sci       Date:  2012-02       Impact factor: 6.725

7.  The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition.

Authors:  Simon J Wardle; Michelle O'Carroll; Keith M Derbyshire; David B Haniford
Journal:  Genes Dev       Date:  2005-09-15       Impact factor: 11.361

Review 8.  DDE transposases: Structural similarity and diversity.

Authors:  Irina V Nesmelova; Perry B Hackett
Journal:  Adv Drug Deliv Rev       Date:  2010-07-06       Impact factor: 15.470

9.  H-NS binds with high affinity to the Tn10 transpososome and promotes transpososome stabilization.

Authors:  Simon J Wardle; Amanda Chan; David B Haniford
Journal:  Nucleic Acids Res       Date:  2009-08-20       Impact factor: 16.971

10.  Base-flipping dynamics in a DNA hairpin processing reaction.

Authors:  Julien Bischerour; Ronald Chalmers
Journal:  Nucleic Acids Res       Date:  2007-04-04       Impact factor: 16.971

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