Literature DB >> 10673010

Functional and evolutionary roles of long repeats in prokaryotes.

E P Rocha1, A Danchin, A Viari.   

Abstract

Most recently published complete bacterial genomes have revealed unexpectedly high numbers of long strict repeats. In this article we discuss the various functional and evolutionary roles of these repeats, focusing in particular on their role in terms of genome stability, gene transfer, and antigenic variation.

Mesh：

Substances：

Year:  1999        PMID： 10673010     DOI： 10.1016/s0923-2508(99)00120-5

Source DB:  PubMed          Journal:  Res Microbiol        ISSN： 0923-2508            Impact factor:   3.992


  22 in total

1.  Mosaic structure of the DNA molecules of the human chromosomes 21 and 22.

Authors:  D Häring; J Kypr
Journal:  Mol Biol Rep       Date:  2001-03       Impact factor: 2.316

2.  Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?

Authors:  Eduardo P C Rocha; Ivan Matic; François Taddei
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

3.  Efficient use of a small genome to generate antigenic diversity in tick-borne ehrlichial pathogens.

Authors:  K A Brayton; D P Knowles; T C McGuire; G H Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

4.  Associations between inverted repeats and the structural evolution of bacterial genomes.

Authors:  Guillaume Achaz; Eric Coissac; Pierre Netter; Eduardo P C Rocha
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

Review 5.  Mobility of plasmids.

Authors:  Chris Smillie; M Pilar Garcillán-Barcia; M Victoria Francia; Eduardo P C Rocha; Fernando de la Cruz
Journal:  Microbiol Mol Biol Rev       Date:  2010-09       Impact factor: 11.056

Review 6.  Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

Authors:  Tim T Binnewies; Yair Motro; Peter F Hallin; Ole Lund; David Dunn; Tom La; David J Hampson; Matthew Bellgard; Trudy M Wassenaar; David W Ussery
Journal:  Funct Integr Genomics       Date:  2006-05-12       Impact factor: 3.410

7.  Use of variations in staphylococcal interspersed repeat units for molecular typing of methicillin-resistant Staphylococcus aureus strains.

Authors:  Katherine J Hardy; Beryl A Oppenheim; Savita Gossain; Fang Gao; Peter M Hawkey
Journal:  J Clin Microbiol       Date:  2006-01       Impact factor: 5.948

8.  Multiple-locus variable-number tandem-repeat analysis of the swine dysentery pathogen, Brachyspira hyodysenteriae.

Authors:  Alvaro Hidalgo; Ana Carvajal; Tom La; Germán Naharro; Pedro Rubio; Nyree D Phillips; David J Hampson
Journal:  J Clin Microbiol       Date:  2010-06-16       Impact factor: 5.948

9.  Genome analysis and strain comparison of correia repeats and correia repeat-enclosed elements in pathogenic Neisseria.

Authors:  Shi V Liu; Nigel J Saunders; Alex Jeffries; Richard F Rest
Journal:  J Bacteriol       Date:  2002-11       Impact factor: 3.490

10.  Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats.

Authors:  Vladimir Paar; Nenad Pavin; Ivan Basar; Marija Rosandić; Matko Gluncić; Nils Paar
Journal:  BMC Bioinformatics       Date:  2008-11-03       Impact factor: 3.169
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.