Literature DB >> 10668804

The SRm160/300 splicing coactivator subunits.

B J Blencowe1, G Baurén, A G Eldridge, R Issner, J A Nickerson, E Rosonina, P A Sharp.   

Abstract

The SRm160/300 splicing coactivator, which consists of the serine/arginine (SR)-related nuclear matrix protein of 160 kDa and a 300-kDa nuclear matrix antigen, functions in splicing by promoting critical interactions between splicing factors bound to pre-mRNA, including snRNPs and SR family proteins. In this article we report the isolation of a cDNA encoding the 300-kDa antigen and investigate the activity of it and SRm160 in splicing. Like SRm160, the 300-kDa antigen contains domains rich in alternating S and R residues but lacks an RNA recognition motif; the protein is accordingly named "SRm300." SRm300 also contains a novel and highly conserved N-terminal domain, several unique repeated motifs rich in S, R, and proline residues, and two very long polyserine tracts. Surprisingly, specific depletion of SRm300 does not prevent the splicing of pre-mRNAs shown previously to require SRm160/300. Addition of recombinant SRm160 alone to SRm160/300-depleted reactions specifically activates splicing. The results indicate that SRm160 may be the more critical component of the SRm160/300 coactivator in the splicing of SRm160/300-dependent pre-mRNAs.

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Year:  2000        PMID: 10668804      PMCID: PMC1369899          DOI: 10.1017/s1355838200991982

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  46 in total

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Authors:  K M Wan; J A Nickerson; G Krockmalnic; S Penman
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

2.  General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer.

Authors:  Q Sun; A Mayeda; R K Hampson; A R Krainer; F M Rottman
Journal:  Genes Dev       Date:  1993-12       Impact factor: 11.361

3.  A purine-rich exon sequence enhances alternative splicing of bovine growth hormone pre-mRNA.

Authors:  W P Dirksen; R K Hampson; Q Sun; F M Rottman
Journal:  J Biol Chem       Date:  1994-03-04       Impact factor: 5.157

4.  The SRm160/300 splicing coactivator is required for exon-enhancer function.

Authors:  A G Eldridge; Y Li; P A Sharp; B J Blencowe
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

5.  Conservation of regulated alternative splicing and identification of functional domains in vertebrate homologs to the Drosophila splicing regulator, suppressor-of-white-apricot.

Authors:  F Denhez; R Lafyatis
Journal:  J Biol Chem       Date:  1994-06-10       Impact factor: 5.157

6.  A splicing enhancer complex controls alternative splicing of doublesex pre-mRNA.

Authors:  M Tian; T Maniatis
Journal:  Cell       Date:  1993-07-16       Impact factor: 41.582

7.  Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors.

Authors:  J F Cáceres; S Stamm; D M Helfman; A R Krainer
Journal:  Science       Date:  1994-09-16       Impact factor: 47.728

8.  A splicing enhancer in the human fibronectin alternate ED1 exon interacts with SR proteins and stimulates U2 snRNP binding.

Authors:  A Lavigueur; H La Branche; A R Kornblihtt; B Chabot
Journal:  Genes Dev       Date:  1993-12       Impact factor: 11.361

9.  Polypurine sequences within a downstream exon function as a splicing enhancer.

Authors:  K Tanaka; A Watakabe; Y Shimura
Journal:  Mol Cell Biol       Date:  1994-02       Impact factor: 4.272

10.  Binding of the Drosophila transformer and transformer-2 proteins to the regulatory elements of doublesex primary transcript for sex-specific RNA processing.

Authors:  K Inoue; K Hoshijima; I Higuchi; H Sakamoto; Y Shimura
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

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  49 in total

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2.  SRm160 splicing coactivator promotes transcript 3'-end cleavage.

Authors:  Susan McCracken; Mark Lambermon; Benjamin J Blencowe
Journal:  Mol Cell Biol       Date:  2002-01       Impact factor: 4.272

Review 3.  Sorting out the complexity of SR protein functions.

Authors:  B R Graveley
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

4.  The spatial targeting and nuclear matrix binding domains of SRm160.

Authors:  Stefan Wagner; Simion Chiosea; Jeffrey A Nickerson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-06       Impact factor: 11.205

5.  Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Authors:  Mihaela Zavolan; Shinji Kondo; Christian Schonbach; Jun Adachi; David A Hume; Yoshihide Hayashizaki; Terry Gaasterland
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

6.  Comparison of nuclear matrix proteins between gastric cancer and normal gastric tissue.

Authors:  Qin-Xian Zhang; Yi Ding; Zhuo Li; Xiao-Ping Le; Wei Zhang; Ling Sun; Hui-Rong Shi
Journal:  World J Gastroenterol       Date:  2004-06-15       Impact factor: 5.742

7.  Proteomic analysis of interchromatin granule clusters.

Authors:  Noriko Saitoh; Chris S Spahr; Scott D Patterson; Paula Bubulya; Andrew F Neuwald; David L Spector
Journal:  Mol Biol Cell       Date:  2004-05-28       Impact factor: 4.138

8.  Nucleoskeleton of early bovine embryos and differentiated somatic cells: an ultrastructural and immunocytochemical comparison.

Authors:  Jéril Degrouard; Pavel Hozák; Yvan Heyman; Jacques-Edmond Fléchon
Journal:  Histochem Cell Biol       Date:  2004-05-25       Impact factor: 4.304

9.  Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles.

Authors:  Ryu Miyagawa; Keiko Tano; Rie Mizuno; Yo Nakamura; Kenichi Ijiri; Randeep Rakwal; Junko Shibato; Yoshinori Masuo; Akila Mayeda; Tetsuro Hirose; Nobuyoshi Akimitsu
Journal:  RNA       Date:  2012-02-21       Impact factor: 4.942

10.  HITS-CLIP reveals sex-differential RNA binding and alterative splicing regulation of SRm160 in Drosophila.

Authors:  Chen Qiu; Yu Zhang; Yu-Jie Fan; Ting-Lin Pang; Yan Su; Shuai Zhan; Yong-Zhen Xu
Journal:  J Mol Cell Biol       Date:  2019-02-01       Impact factor: 6.216

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