Literature DB >> 10339552

The SRm160/300 splicing coactivator is required for exon-enhancer function.

A G Eldridge1, Y Li, P A Sharp, B J Blencowe.   

Abstract

Exonic splicing enhancer (ESE) sequences are important for the recognition of splice sites in pre-mRNA. These sequences are bound by specific serine-arginine (SR) repeat proteins that promote the assembly of splicing complexes at adjacent splice sites. We have recently identified a splicing "coactivator," SRm160/300, which contains SRm160 (the SR nuclear matrix protein of 160 kDa) and a 300-kDa nuclear matrix antigen. In the present study, we show that SRm160/300 is required for a purine-rich ESE to promote the splicing of a pre-mRNA derived from the Drosophila doublesex gene. The association of SRm160/300 and U2 small nuclear ribonucleoprotein particle (snRNP) with this pre-mRNA requires both U1 snRNP and factors bound to the ESE. Independently of pre-mRNA, SRm160/300 specifically interacts with U2 snRNP and with a human homolog of the Drosophila alternative splicing regulator Transformer 2, which binds to purine-rich ESEs. The results suggest a model for ESE function in which the SRm160/300 splicing coactivator promotes critical interactions between ESE-bound "activators" and the snRNP machinery of the spliceosome.

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Year:  1999        PMID: 10339552      PMCID: PMC26846          DOI: 10.1073/pnas.96.11.6125

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Purification and depletion of RNP particles by antisense affinity chromatography.

Authors:  B J Blencowe; A I Lamond
Journal:  Methods Mol Biol       Date:  1999

2.  Sequence-specific affinity selection of mammalian splicing complexes.

Authors:  U Ryder; B S Sproat; A I Lamond
Journal:  Nucleic Acids Res       Date:  1990-12-25       Impact factor: 16.971

3.  The essential pre-mRNA splicing factor SF2 influences 5' splice site selection by activating proximal sites.

Authors:  A R Krainer; G C Conway; D Kozak
Journal:  Cell       Date:  1990-07-13       Impact factor: 41.582

4.  Antisense probing of the human U4/U6 snRNP with biotinylated 2'-OMe RNA oligonucleotides.

Authors:  B J Blencowe; B S Sproat; U Ryder; S Barabino; A I Lamond
Journal:  Cell       Date:  1989-11-03       Impact factor: 41.582

5.  Positive control of pre-mRNA splicing in vitro.

Authors:  M Tian; T Maniatis
Journal:  Science       Date:  1992-04-10       Impact factor: 47.728

6.  A protein factor, ASF, controls cell-specific alternative splicing of SV40 early pre-mRNA in vitro.

Authors:  H Ge; J L Manley
Journal:  Cell       Date:  1990-07-13       Impact factor: 41.582

7.  Pre-mRNA splicing of IgM exons M1 and M2 is directed by a juxtaposed splicing enhancer and inhibitor.

Authors:  J L Kan; M R Green
Journal:  Genes Dev       Date:  1999-02-15       Impact factor: 11.361

8.  Binding of the Drosophila transformer and transformer-2 proteins to the regulatory elements of doublesex primary transcript for sex-specific RNA processing.

Authors:  K Inoue; K Hoshijima; I Higuchi; H Sakamoto; Y Shimura
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

9.  A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription.

Authors:  M B Roth; A M Zahler; J A Stolk
Journal:  J Cell Biol       Date:  1991-11       Impact factor: 10.539

10.  A monoclonal antibody that recognizes a phosphorylated epitope stains lampbrush chromosome loops and small granules in the amphibian germinal vesicle.

Authors:  M B Roth; C Murphy; J G Gall
Journal:  J Cell Biol       Date:  1990-12       Impact factor: 10.539

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  31 in total

1.  Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions.

Authors:  H Le Hir; M J Moore; L E Maquat
Journal:  Genes Dev       Date:  2000-05-01       Impact factor: 11.361

2.  The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions.

Authors:  H Le Hir; E Izaurralde; L E Maquat; M J Moore
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

3.  SRm160 splicing coactivator promotes transcript 3'-end cleavage.

Authors:  Susan McCracken; Mark Lambermon; Benjamin J Blencowe
Journal:  Mol Cell Biol       Date:  2002-01       Impact factor: 4.272

Review 4.  Sorting out the complexity of SR protein functions.

Authors:  B R Graveley
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

5.  Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.

Authors:  Blair R Szymczyna; John Bowman; Susan McCracken; Antonio Pineda-Lucena; Ying Lu; Brian Cox; Mark Lambermon; Brenton R Graveley; Cheryl H Arrowsmith; Benjamin J Blencowe
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

6.  Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Authors:  Mihaela Zavolan; Shinji Kondo; Christian Schonbach; Jun Adachi; David A Hume; Yoshihide Hayashizaki; Terry Gaasterland
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

7.  Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions.

Authors:  Jochen Deckert; Klaus Hartmuth; Daniel Boehringer; Nastaran Behzadnia; Cindy L Will; Berthold Kastner; Holger Stark; Henning Urlaub; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

8.  HITS-CLIP reveals sex-differential RNA binding and alterative splicing regulation of SRm160 in Drosophila.

Authors:  Chen Qiu; Yu Zhang; Yu-Jie Fan; Ting-Lin Pang; Yan Su; Shuai Zhan; Yong-Zhen Xu
Journal:  J Mol Cell Biol       Date:  2019-02-01       Impact factor: 6.216

9.  Dual function for U2AF(35) in AG-dependent pre-mRNA splicing.

Authors:  S Guth; T Ø Tange; E Kellenberger; J Valcárcel
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

Review 10.  Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches.

Authors:  Mo Chen; James L Manley
Journal:  Nat Rev Mol Cell Biol       Date:  2009-09-23       Impact factor: 94.444

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