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Literature DB >> 10668794

On the wobble GoU and related pairs.

Abstract

The wobble GoU pairs have been implicated in several biological processes where RNA molecules play a key role. We review the geometrical and conformational properties of wobble GoU pairs on the basis of available crystal structures of RNAs at high resolution. The similarities with the wobble A+oC pairs and UoU pairs are illustrated, while the differences with the recently discovered bifurcated G x U pairs are contrasted.

Mesh：

Substances：
RNA

Year: 2000 PMID： 10668794 PMCID： PMC1369889 DOI： 10.1017/s1355838200992082

Source DB: PubMed Journal: RNA ISSN： 1355-8382 Impact factor: 4.942

54 in total

1. Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes.

Authors: P Auffinger; E Westhof
Journal: J Mol Biol Date: 1999-09-24 Impact factor: 5.469

2. Crystal structure of a 14 bp RNA duplex with non-symmetrical tandem GxU wobble base pairs.

Authors: J Trikha; D J Filman; J M Hogle
Journal: Nucleic Acids Res Date: 1999-04-01 Impact factor: 16.971

3. Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution.

Authors: U Mueller; H Schübel; M Sprinzl; U Heinemann
Journal: RNA Date: 1999-05 Impact factor: 4.942

4. Hydration of RNA base pairs.

Authors: P Auffinger; E Westhof
Journal: J Biomol Struct Dyn Date: 1998-12

5. Isoalloxazine derivatives promote photocleavage of natural RNAs at G.U base pairs embedded within helices.

Authors: P Burgstaller; T Hermann; C Huber; E Westhof; M Famulok
Journal: Nucleic Acids Res Date: 1997-10-15 Impact factor: 16.971

6. The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure.

Authors: N B Leontis; E Westhof
Journal: RNA Date: 1998-09 Impact factor: 4.942

7. DNA bending: the prevalence of kinkiness and the virtues of normality.

Authors: R E Dickerson
Journal: Nucleic Acids Res Date: 1998-04-15 Impact factor: 16.971

8. Crystal structure of an RNA duplex r(G GCGC CC)2 with non-adjacent G*U base pairs.

Authors: K Shi; M Wahl; M Sundaralingam
Journal: Nucleic Acids Res Date: 1999-05-15 Impact factor: 16.971

9. Structure of a 16-mer RNA duplex r(GCAGACUUAAAUCUGC)2 with wobble C.A+ mismatches.

Authors: B Pan; S N Mitra; M Sundaralingam
Journal: J Mol Biol Date: 1998-11-13 Impact factor: 5.469

10. Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations.

Authors: T Hermann; E Westhof
Journal: Structure Date: 1998-10-15 Impact factor: 5.006

66 in total

Review 1. The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.

Authors: G Varani; W H McClain
Journal: EMBO Rep Date: 2000-07 Impact factor: 8.807

On the wobble GoU and related pairs.

1. Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes.

2. Crystal structure of a 14 bp RNA duplex with non-symmetrical tandem GxU wobble base pairs.

3. Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution.

4. Hydration of RNA base pairs.

5. Isoalloxazine derivatives promote photocleavage of natural RNAs at G.U base pairs embedded within helices.

6. The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure.

7. DNA bending: the prevalence of kinkiness and the virtues of normality.

8. Crystal structure of an RNA duplex r(G GCGC CC)2 with non-adjacent G*U base pairs.

9. Structure of a 16-mer RNA duplex r(GCAGACUUAAAUCUGC)2 with wobble C.A+ mismatches.

10. Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations.

Review 1. The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.

2. Structural features of an influenza virus promoter and their implications for viral RNA synthesis.

Review 3. Disease-related versus polymorphic mutations in human mitochondrial tRNAs. Where is the difference?

4. NCIR: a database of non-canonical interactions in known RNA structures.

5. Specific cleavage of hyper-edited dsRNAs.

6. Geometric nomenclature and classification of RNA base pairs.

7. Effects of magnesium ions on the stabilization of RNA oligomers of defined structures.

8. Specificity of RNA-RNA helix recognition.

9. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

10. The non-Watson-Crick base pairs and their associated isostericity matrices.