Literature DB >> 10662539

Analysis of association at single nucleotide polymorphisms in the APOE region.

E R Martin1, J R Gilbert, E H Lai, J Riley, A R Rogala, B D Slotterbeck, C A Sipe, J M Grubber, L L Warren, P M Conneally, A M Saunders, D E Schmechel, I Purvis, M A Pericak-Vance, A D Roses, J M Vance.   

Abstract

The discussion of the prospects of using a dense map of single nucleotide polymorphisms (SNPs) to identify disease genes with association analysis has been extensive. However, there is little empiric evidence to support this strategy. To begin to examine the practical issues surrounding this methodology, we identified 10 SNPs in the region immediately surrounding the apolipoprotein E locus (APOE), an established susceptibility gene for Alzheimer disease. Our goal was to examine patterns of allelic association to begin to investigate the question of whether APOE could have been identified using SNPs. Our strongest evidence of association was at the 2 SNPs immediately flanking APOE. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10662539     DOI: 10.1006/geno.1999.6057

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  15 in total

1.  Genetic analysis of case/control data using estimated haplotype frequencies: application to APOE locus variation and Alzheimer's disease.

Authors:  D Fallin; A Cohen; L Essioux; I Chumakov; M Blumenfeld; D Cohen; N J Schork
Journal:  Genome Res       Date:  2001-01       Impact factor: 9.043

2.  Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data.

Authors:  Toshikazu Ito; Suenori Chiku; Eisuke Inoue; Makoto Tomita; Takayuki Morisaki; Hiroko Morisaki; Naoyuki Kamatani
Journal:  Am J Hum Genet       Date:  2003-01-17       Impact factor: 11.025

3.  Direct molecular haplotyping of long-range genomic DNA with M1-PCR.

Authors:  Chunming Ding; Charles R Cantor
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-11       Impact factor: 11.205

4.  Family-based association tests using genotype data with uncertainty.

Authors:  Zhaoxia Yu
Journal:  Biostatistics       Date:  2011-12-08       Impact factor: 5.899

Review 5.  Neurogenetics II: complex disorders.

Authors:  A F Wright
Journal:  J Neurol Neurosurg Psychiatry       Date:  2005-05       Impact factor: 10.154

Review 6.  Genetic epidemiology in aging research.

Authors:  M Daniele Fallin; Amy Matteini
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2009-01-23       Impact factor: 6.053

7.  Family-based tests of association in the presence of linkage.

Authors:  S L Lake; D Blacker; N M Laird
Journal:  Am J Hum Genet       Date:  2000-10-31       Impact factor: 11.025

8.  Complex SNP-based haplotypes in three human helicases: implications for cancer association studies.

Authors:  Dimitra Trikka; Zhe Fang; Alex Renwick; Sally H Jones; Ranajit Chakraborty; Marek Kimmel; David L Nelson
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

9.  SNPing away at complex diseases: analysis of single-nucleotide polymorphisms around APOE in Alzheimer disease.

Authors:  E R Martin; E H Lai; J R Gilbert; A R Rogala; A J Afshari; J Riley; K L Finch; J F Stevens; K J Livak; B D Slotterbeck; S H Slifer; L L Warren; P M Conneally; D E Schmechel; I Purvis; M A Pericak-Vance; A D Roses; J M Vance
Journal:  Am J Hum Genet       Date:  2000-06-21       Impact factor: 11.025

10.  The extent of linkage disequilibrium in rice (Oryza sativa L.).

Authors:  Kristie A Mather; Ana L Caicedo; Nicholas R Polato; Kenneth M Olsen; Susan McCouch; Michael D Purugganan
Journal:  Genetics       Date:  2007-10-18       Impact factor: 4.562

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