Literature DB >> 10661394

Identification of reliable spike templates in multi-unit extracellular recordings using fuzzy clustering.

G Zouridakis1, D C Tam.   

Abstract

A method for extracting single-unit spike trains from extracellular recordings containing the activity of several simultaneously active cells is presented. The technique is particularly effective when spikes overlap temporally. It is capable of identifying the exact number of neurons contributing to a recording and of creating reliable spike templates. The procedure is based on fuzzy clustering and its performance is controlled by minimizing a cluster-validity index which optimizes the compactness and separation of the identified clusters. Application examples with synthetic spike trains generated from real spikes and segments of background noise show the advantage of the fuzzy method over conventional template-creation approaches in a wide range of signal-to-noise ratios.

Mesh:

Year:  2000        PMID: 10661394     DOI: 10.1016/s0169-2607(99)00032-2

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  15 in total

1.  Cerebral energetics and spiking frequency: the neurophysiological basis of fMRI.

Authors:  Arien J Smith; Hal Blumenfeld; Kevin L Behar; Douglas L Rothman; Robert G Shulman; Fahmeed Hyder
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-19       Impact factor: 11.205

2.  Total neuroenergetics support localized brain activity: implications for the interpretation of fMRI.

Authors:  Fahmeed Hyder; Douglas L Rothman; Robert G Shulman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-19       Impact factor: 11.205

3.  Automated spike sorting using density grid contour clustering and subtractive waveform decomposition.

Authors:  Carlos Vargas-Irwin; John P Donoghue
Journal:  J Neurosci Methods       Date:  2007-04-12       Impact factor: 2.390

4.  Spike sorting based on multi-class support vector machine with superposition resolution.

Authors:  Weidong Ding; Jingqi Yuan
Journal:  Med Biol Eng Comput       Date:  2007-09-15       Impact factor: 2.602

5.  Using a common average reference to improve cortical neuron recordings from microelectrode arrays.

Authors:  Kip A Ludwig; Rachel M Miriani; Nicholas B Langhals; Michael D Joseph; David J Anderson; Daryl R Kipke
Journal:  J Neurophysiol       Date:  2008-12-24       Impact factor: 2.714

6.  Pulmonary stretch receptor spike time precision increases with lung inflation amplitude and airway smooth muscle tension.

Authors:  Yan Chen; Vitaly Marchenko; Robert F Rogers
Journal:  J Neurophysiol       Date:  2011-03-16       Impact factor: 2.714

7.  Spike sorting paradigm for classification of multi-channel recorded fasciculation potentials.

Authors:  Faezeh Jahanmiri-Nezhad; Paul E Barkhaus; William Zev Rymer; Ping Zhou
Journal:  Comput Biol Med       Date:  2014-10-05       Impact factor: 4.589

8.  An automatic measure for classifying clusters of suspected spikes into single cells versus multiunits.

Authors:  Ariel Tankus; Yehezkel Yeshurun; Itzhak Fried
Journal:  J Neural Eng       Date:  2009-08-07       Impact factor: 5.379

9.  Wavelet methods for spike detection in mouse renal sympathetic nerve activity.

Authors:  Robert J Brychta; Sunti Tuntrakool; Martin Appalsamy; Nancy R Keller; David Robertson; Richard G Shiavi; André Diedrich
Journal:  IEEE Trans Biomed Eng       Date:  2007-01       Impact factor: 4.538

10.  Automatic classification of motor unit potentials in surface EMG recorded from thenar muscles paralyzed by spinal cord injury.

Authors:  Jeffrey Winslow; Marine Dididze; Christine K Thomas
Journal:  J Neurosci Methods       Date:  2009-09-15       Impact factor: 2.390

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